Non-Coding RNA Search

Ss1.1-rfat0138_j4.5

Sequence:


               
               TTATGGCTCAAAGCCAGAGCCCACTACAAAAGTGCGCTTTCACTGGGTTGCTACCCACCA
CTGGAGGGAAATTTGTACCGGAAACTTCTACTAATTCCTTCCTATTTGTCTGAGATTGAA
ATGCTTTTAGCTATTGAAATCTTCCTGGTATCTAATGCTAGTAGTATTCAGAGTCCTGGA
ACTTCTACACAGATGCTGCAGATAGTTTTAAAAAGATGCGAAGAAAACAAATCTCGGAGC
AAGGACGATTATCAAGCTGCAGTGGAAAGATTAATTATGGCTGCTCGTATATCAGATCCA
AAGCTTTTCATTAAGCACATGACCGTCAATGTTAATAAGGAACAGGTTTATAGTTTGGAA
CATTGTTCTGCCCTCAAATGGTTGAAAGAGAATATGAAGTGGGCTGGAAAGGTTTGGCTT
TTCAATAACCGTTAGTTATTAAAGACTTTTTTTTTTAAGTTCAAGTAATCATTGTTGAAA
ATAAAAGGCAATAAAAATAGTTTTACCATAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTATGGCTCAAAGCCAGAGCCCACTACAAAAGTGCGCTTTCACTGGGTTGCTACCCACCA
CTGGAGGGAAATTTGTACCGGAAACTTCTACTAATTCCTTCCTATTTGTCTGAGATTGAA
ATGCTTTTAGCTATTGAAATCTTCCTGGTATCTAATGCTAGTAGTATTCAGAGTCCTGGA
ACTTCTACACAGATGCTGCAGATAGTTTTAAAAAGATGCGAAGAAAACAAATCTCGGAGC
AAGGACGATTATCAAGCTGCAGTGGAAAGATTAATTATGGCTGCTCGTATATCAGATCCA
AAGCTTTTCATTAAGCACATGACCGTCAATGTTAATAAGGAACAGGTTTATAGTTTGGAA
CATTGTTCTGCCCTCAAATGGTTGAAAGAGAATATGAAGTGGGCTGGAAAGGTTTGGCTT
TTCAATAACCGTTAGTTATTAAAGACTTTTTTTTTTAAGTTCAAGTAATCATTGTTGAAA
ATAAAAGGCAATAAAAATAGTTTTACCATAAAAAAAAAAAAAAAAAAA

Aligned organism(s): 15 entry(ies)

More info

Aligned organism(s): 15 entry(ies)

Help | Less info


               
               32-226, gnl|bosTau2|chr22 (12608261-12608067)
               

               
               32-226, gnl|canFam2|chr23 (5016868-5016605)
               

               
               32-226, gnl|echTel1|scaffold_29439 (3334-3080)
               

               
               32-226, gnl|galGal2|chr2 (39766664-39766394)
               

               
               32-226, gnl|hg17|chr3 (44344706-44344967)
               

               
               32-226, gnl|Hg17|chr3 (44344746-44344940)
               

               
               32-226, gnl|loxAfr1|scaffold_6196 (22473-22219)
               

               
               32-226, gnl|mm7|chr9 (122504761-122505027)
               

               
               32-226, gnl|Mm7|chr9 (122504800-122505000)
               

               
               32-226, gnl|monDom2|scaffold_7 (88429567-88429294)
               

               
               32-226, gnl|oryCun1|scaffold_146677 (12103-11843)
               

               
               32-226, gnl|panTro1|chr2 (45639114-45639375)
               

               
               32-226, gnl|rheMac2|chr2 (92273818-92273557)
               

               
               32-226, gnl|rn3|chr8 (127519572-127519828)
               

               
               32-226, gnl|xenTro1|scaffold_319 (948549-948793)

Aligned organism(s): 15 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               32-226, gnl|bosTau2|chr22 (12608261-12608067)
               

               
               32-226, gnl|canFam2|chr23 (5016868-5016605)
               

               
               32-226, gnl|echTel1|scaffold_29439 (3334-3080)
               

               
               32-226, gnl|galGal2|chr2 (39766664-39766394)
               

               
               32-226, gnl|hg17|chr3 (44344706-44344967)
               

               
               32-226, gnl|Hg17|chr3 (44344746-44344940)
               

               
               32-226, gnl|loxAfr1|scaffold_6196 (22473-22219)
               

               
               32-226, gnl|mm7|chr9 (122504761-122505027)
               

               
               32-226, gnl|Mm7|chr9 (122504800-122505000)
               

               
               32-226, gnl|monDom2|scaffold_7 (88429567-88429294)
               

               
               32-226, gnl|oryCun1|scaffold_146677 (12103-11843)
               

               
               32-226, gnl|panTro1|chr2 (45639114-45639375)
               

               
               32-226, gnl|rheMac2|chr2 (92273818-92273557)
               

               
               32-226, gnl|rn3|chr8 (127519572-127519828)
               

               
               32-226, gnl|xenTro1|scaffold_319 (948549-948793)

Expressed library(ies): 3 entry(ies)

More info

Expressed library(ies): 3 entry(ies)

Help | Less info


               
               bfe (0.149858)
               

               
               fat (0.147427)
               

               
               lin (0.145603)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               bfe (0.149858)
               

               
               fat (0.147427)
               

               
               lin (0.145603)

	32-226, gnl\|bosTau2\|chr22 (12608261-12608067)
	32-226, gnl\|canFam2\|chr23 (5016868-5016605)
	32-226, gnl\|echTel1\|scaffold_29439 (3334-3080)
	32-226, gnl\|galGal2\|chr2 (39766664-39766394)
	32-226, gnl\|hg17\|chr3 (44344706-44344967)
	32-226, gnl\|Hg17\|chr3 (44344746-44344940)
	32-226, gnl\|loxAfr1\|scaffold_6196 (22473-22219)
	32-226, gnl\|mm7\|chr9 (122504761-122505027)
	32-226, gnl\|Mm7\|chr9 (122504800-122505000)
	32-226, gnl\|monDom2\|scaffold_7 (88429567-88429294)
	32-226, gnl\|oryCun1\|scaffold_146677 (12103-11843)
	32-226, gnl\|panTro1\|chr2 (45639114-45639375)
	32-226, gnl\|rheMac2\|chr2 (92273818-92273557)
	32-226, gnl\|rn3\|chr8 (127519572-127519828)
	32-226, gnl\|xenTro1\|scaffold_319 (948549-948793)