Non-Coding RNA Search

Ss1.1-rfat0139_n11.5

Sequence:


               
               TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAGAACTAGTTATTTTATTAAATGAT
ATTAATACACATTTCAAAAAAGATTTCATTGTTGTTGCCTCTAAAGCATATACTCATTTG
GTTTTCCACACTGAACACGTGAGAATATCAATCCAACATATCTAATTTTAATCTTAACAG
GCACCCCAGCCCATTCAAAAAAGGGGGGCAGAGAGGAGAAGGAAAAAAAAAGGGAAAAGC
AGTAATTTACAGCGGCTTCAAAACATTAACAGCTGAAGCTTAATTCTGCATGAACCAGTA
ACTTCAGGATTGATAGTGAATATTCTGCAATTAGGAAGTTTAGCATATTCACATTATCTA
GATAGGTCTGCTGTACCATATATATCACAAACATTGTATTCCTGGGATCGGAAAGGATGA
AAATTCTAGTCTCTGATCATTTTACCCTCCCTGGAAACAAACCAAATTCTATTTACTCTC
AACTTTTGGGAGGGGAGCAGGGAGAGGTCTCATCTAAGCTGACTAAGAAGTAAACTCTTA
CAAAATACTTAAGTACTCAATTTCTCATACTGTATCACTGAGTTTTAAGTAGTACCCGTG
TATTCATGACCCCCACCCACCAATTCTCTGTCTGTGATTTTACAGTGAGCACCAAGGACC
TTAGTAACAACTTCACATATTCTGCTTTCATATGAATCACGTCCTTGCCAAAACACACTA
TGCTATGCTTTCTTTAAAAAAAAAAAAAAAAAAAAAAAACTTGTTTATTTTTTAAAATTC
AGGTTGAAATACAAAAGTCAGAGCATGGGCACGGAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAGAACTAGTTATTTTATTAAATGAT
ATTAATACACATTTCAAAAAAGATTTCATTGTTGTTGCCTCTAAAGCATATACTCATTTG
GTTTTCCACACTGAACACGTGAGAATATCAATCCAACATATCTAATTTTAATCTTAACAG
GCACCCCAGCCCATTCAAAAAAGGGGGGCAGAGAGGAGAAGGAAAAAAAAAGGGAAAAGC
AGTAATTTACAGCGGCTTCAAAACATTAACAGCTGAAGCTTAATTCTGCATGAACCAGTA
ACTTCAGGATTGATAGTGAATATTCTGCAATTAGGAAGTTTAGCATATTCACATTATCTA
GATAGGTCTGCTGTACCATATATATCACAAACATTGTATTCCTGGGATCGGAAAGGATGA
AAATTCTAGTCTCTGATCATTTTACCCTCCCTGGAAACAAACCAAATTCTATTTACTCTC
AACTTTTGGGAGGGGAGCAGGGAGAGGTCTCATCTAAGCTGACTAAGAAGTAAACTCTTA
CAAAATACTTAAGTACTCAATTTCTCATACTGTATCACTGAGTTTTAAGTAGTACCCGTG
TATTCATGACCCCCACCCACCAATTCTCTGTCTGTGATTTTACAGTGAGCACCAAGGACC
TTAGTAACAACTTCACATATTCTGCTTTCATATGAATCACGTCCTTGCCAAAACACACTA
TGCTATGCTTTCTTTAAAAAAAAAAAAAAAAAAAAAAAACTTGTTTATTTTTTAAAATTC
AGGTTGAAATACAAAAGTCAGAGCATGGGCACGGAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               404-551, + strand, RNAz p=0.989508

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               404-551, + strand, RNAz p=0.989508

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               33-740, gnl|bosTau2|chr3 (17024235-17024938)
               

               
               33-740, gnl|Hg17|chr1 (147262115-147261423)
               

               
               33-740, gnl|Mm7|chr3 (95634295-95634979)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               33-740, gnl|bosTau2|chr3 (17024235-17024938)
               

               
               33-740, gnl|Hg17|chr1 (147262115-147261423)
               

               
               33-740, gnl|Mm7|chr3 (95634295-95634979)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               rec (0.17307)
               

               
               eye (0.170503)
               

               
               fat (0.147427)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               rec (0.17307)
               

               
               eye (0.170503)
               

               
               fat (0.147427)

	33-740, gnl\|bosTau2\|chr3 (17024235-17024938)
	33-740, gnl\|Hg17\|chr1 (147262115-147261423)
	33-740, gnl\|Mm7\|chr3 (95634295-95634979)