Ss1.1-rfat0140_a13.5
|
AAGGTTACGGCTTCTTTCTCACCTTGAAGAATAATCCTAGAGTGCTCACAAAATGTGTGA
TGCATTTGTAGGTACCTGGAAACTTGTCTCCAGTGAAAACTTTGATGATTACATGAAAGA
AGTGGGAGTGGGCTTTGCCACCAGGAAGGTGGCTGGCATGGCCAAACCCAACCTGATCAT
CACTGTGAATGGGGATATGATCACCATTAGATCAGAAAGTACCTTTAAAAATACTGAGAT
TGCCTTCAAATTGGGCCAGGAATTTGATGAAGTCACTGCAGATGACAGGAAAGTCAAGAG
CACCATAACCTTAGATGGAGGCGCCCTGGTACAGGTGCAGAAGTGGGATGGAAAGACAAC
CACCATAAACAGAAAAATAGTAGATGATAAGTTGGTGGTGGAATGTATCATGAAAGGTGT
CACGGCTACCAGAATTTATGAGAGAGCATAAGCCAAATTGTACAAAAGTTTGGATCGAAC
TCTACAACACTCTGTTGGATGTATTGTCCCGACATATGTTGTTATTTTCCACTAATTAGG
AAGCAACTAATTTTCCCCCAGACTGATTTTGTTCAATATGCTTGTTGGTTAAATAAAACT
TTTTAGATTTAAAAAAAAAAAAAATGATTTATTCATTGTGTTAGATAACTTCTTACTTAT
AACAGTGAAGAGACTAGAAAGATTGTATAATTTCTTTGTTTCCAGTAGAATATGATTTTT
TAAATAATAATCCAAGGTGAAAAA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
AAGGTTACGGCTTCTTTCTCACCTTGAAGAATAATCCTAGAGTGCTCACAAAATGTGTGA
TGCATTTGTAGGTACCTGGAAACTTGTCTCCAGTGAAAACTTTGATGATTACATGAAAGA
AGTGGGAGTGGGCTTTGCCACCAGGAAGGTGGCTGGCATGGCCAAACCCAACCTGATCAT
CACTGTGAATGGGGATATGATCACCATTAGATCAGAAAGTACCTTTAAAAATACTGAGAT
TGCCTTCAAATTGGGCCAGGAATTTGATGAAGTCACTGCAGATGACAGGAAAGTCAAGAG
CACCATAACCTTAGATGGAGGCGCCCTGGTACAGGTGCAGAAGTGGGATGGAAAGACAAC
CACCATAAACAGAAAAATAGTAGATGATAAGTTGGTGGTGGAATGTATCATGAAAGGTGT
CACGGCTACCAGAATTTATGAGAGAGCATAAGCCAAATTGTACAAAAGTTTGGATCGAAC
TCTACAACACTCTGTTGGATGTATTGTCCCGACATATGTTGTTATTTTCCACTAATTAGG
AAGCAACTAATTTTCCCCCAGACTGATTTTGTTCAATATGCTTGTTGGTTAAATAAAACT
TTTTAGATTTAAAAAAAAAAAAAATGATTTATTCATTGTGTTAGATAACTTCTTACTTAT
AACAGTGAAGAGACTAGAAAGATTGTATAATTTCTTTGTTTCCAGTAGAATATGATTTTT
TAAATAATAATCCAAGGTGAAAAA
|
|
gi|4160392|emb|CAA75995.1| |
Protein identifier
|
gi|4160392|emb|CAA75995.1| |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
125-298, gnl|bosTau2|chr14 (25665830-25665657) |
|
125-298, gnl|canFam2|chr29 (31655375-31655601) |
|
125-298, gnl|dasNov1|scaffold_1005 (3345-3561) |
|
125-298, gnl|echTel1|scaffold_308568 (10764-10552) |
|
125-298, gnl|hg17|chr8 (82555207-82555428) |
|
125-298, gnl|Hg17|chr8 (82555389-82555216) |
|
125-298, gnl|loxAfr1|scaffold_10783 (28758-28533) |
|
125-298, gnl|mm7|chr3 (10214126-10214346) |
|
125-298, gnl|Mm7|chr3 (10214308-10214135) |
|
125-298, gnl|monDom2|scaffold_4 (75884391-75884170) |
|
125-298, gnl|oryCun1|scaffold_204330 (53861-54081) |
|
125-298, gnl|panTro1|chr7 (84686930-84687150) |
|
125-298, gnl|rheMac2|chr8 (83922754-83922975) |
|
125-298, gnl|rn3|chr2 (93483724-93483503) |
|
125-298, gnl|xenTro1|scaffold_259 (1370165-1369959) |
| |
|
400-744, gnl|bosTau2|chr14 (25664498-25664146) |
|
400-744, gnl|Hg17|chr8 (82553706-82553344) |
|
400-744, gnl|Mm7|chr3 (10212756-10212393) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
125-298, gnl|bosTau2|chr14 (25665830-25665657) |
|
125-298, gnl|canFam2|chr29 (31655375-31655601) |
|
125-298, gnl|dasNov1|scaffold_1005 (3345-3561) |
|
125-298, gnl|echTel1|scaffold_308568 (10764-10552) |
|
125-298, gnl|hg17|chr8 (82555207-82555428) |
|
125-298, gnl|Hg17|chr8 (82555389-82555216) |
|
125-298, gnl|loxAfr1|scaffold_10783 (28758-28533) |
|
125-298, gnl|mm7|chr3 (10214126-10214346) |
|
125-298, gnl|Mm7|chr3 (10214308-10214135) |
|
125-298, gnl|monDom2|scaffold_4 (75884391-75884170) |
|
125-298, gnl|oryCun1|scaffold_204330 (53861-54081) |
|
125-298, gnl|panTro1|chr7 (84686930-84687150) |
|
125-298, gnl|rheMac2|chr8 (83922754-83922975) |
|
125-298, gnl|rn3|chr2 (93483724-93483503) |
|
125-298, gnl|xenTro1|scaffold_259 (1370165-1369959) |
| |
|
400-744, gnl|bosTau2|chr14 (25664498-25664146) |
|
400-744, gnl|Hg17|chr8 (82553706-82553344) |
|
400-744, gnl|Mm7|chr3 (10212756-10212393) |
|
fat (26.6844) |
|
ski (5.13573) |
|
csk (4.08163) |
|
hea (3.06748) |
|
aor (2.34329) |
|
nep (2.2071) |
|
sug (2.03666) |
|
gul (1.95347) |
|
med (1.74378) |
|
mcp (1.70648) |
|
mgm (1.2624) |
|
ste (1.21687) |
|
jca (1.1396) |
|
nms (1.06929) |
|
rec (1.03842) |
|
bfe (0.899146) |
|
cst (0.840218) |
|
mga (0.801025) |
|
tra (0.61546) |
|
sme (0.610874) |
|
ssp (0.542079) |
|
ldo (0.485013) |
|
mgp (0.461361) |
|
cmu (0.372787) |
|
sto (0.359648) |
|
vin (0.332557) |
|
pty (0.285429) |
|
hlv (0.278513) |
|
nca (0.273748) |
|
cly (0.241284) |
|
mas (0.210305) |
|
sag (0.182715) |
|
fhi (0.169578) |
|
cag (0.151194) |
|
isp (0.150376) |
|
lnt (0.142308) |
|
che (0.136314) |
|
pla (0.133672) |
|
lyg (0.133103) |
|
thg (0.126791) |
|
eep (0.122564) |
|
spc (0.113366) |
|
fat (26.6844) |
|
ski (5.13573) |
|
csk (4.08163) |
|
hea (3.06748) |
|
aor (2.34329) |
|
nep (2.2071) |
|
sug (2.03666) |
|
gul (1.95347) |
|
med (1.74378) |
|
mcp (1.70648) |
|
mgm (1.2624) |
|
ste (1.21687) |
|
jca (1.1396) |
|
nms (1.06929) |
|
rec (1.03842) |
|
bfe (0.899146) |
|
cst (0.840218) |
|
mga (0.801025) |
|
tra (0.61546) |
|
sme (0.610874) |
|
ssp (0.542079) |
|
ldo (0.485013) |
|
mgp (0.461361) |
|
cmu (0.372787) |
|
sto (0.359648) |
|
vin (0.332557) |
|
pty (0.285429) |
|
hlv (0.278513) |
|
nca (0.273748) |
|
cly (0.241284) |
|
mas (0.210305) |
|
sag (0.182715) |
|
fhi (0.169578) |
|
cag (0.151194) |
|
isp (0.150376) |
|
lnt (0.142308) |
|
che (0.136314) |
|
pla (0.133672) |
|
lyg (0.133103) |
|
thg (0.126791) |
|
eep (0.122564) |
|
spc (0.113366) |
