Ss1.1-rfat0140_c19.5
|
TCTACTGCGAGAATGAAGACCATTCTCAGCAATCAGACTGTCGACATTCCAGAAAATGTC
GACATCACACTAAAAGGACGCACAGTCATTGTGAAGGGCCCCAGAGGCACTCTGAGGAGG
GACTTCAACCACATCAATGTAGAACTCAGTCTCCTTGGAAAGAAAAAGAAGAGGCTCCGG
GTTGACAAATGGTGGGGAAATAGAAAGGAACTGGCAACTGTTCGCACCATCTGTAGTCAT
GTACAGAATATGATCAAGGGTGTTACACTGGGCTTCCGTTACAAGATGAGGTCTGTGTAT
GCTCACTTCCCCATCAACGTCGTTATTCAGGAGAATGGTTCTCTTGTTGAAATCCGAAAT
TTTTTGGGTGAAAAATATATCCGCAGGGTTCGGATGAGGCCAGGGGTTGCTTGTTCAGTA
TCTCAAGCCCAGAAAGATGAGCTGATTTTAGAAGGAAATGACATTGAACTTGTATCAAAT
TCAGCTGCTTTGATTCAGCAAGCCACAACTGTTAAGAACAAGGATATCAGAAAATTTTTG
GATGGTATCTATGTTTCTGAAAAAGGAACAGTTCAGCAGGCTGATGAGTAAGATTTGAGT
TGTCCCGGCTACAGAAACAACAAGATGCCAGATGATTCTTCACATTCATTTGTGATGTTT
TACGATACAATAAAAAGTCTATTGACTTAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
TCTACTGCGAGAATGAAGACCATTCTCAGCAATCAGACTGTCGACATTCCAGAAAATGTC
GACATCACACTAAAAGGACGCACAGTCATTGTGAAGGGCCCCAGAGGCACTCTGAGGAGG
GACTTCAACCACATCAATGTAGAACTCAGTCTCCTTGGAAAGAAAAAGAAGAGGCTCCGG
GTTGACAAATGGTGGGGAAATAGAAAGGAACTGGCAACTGTTCGCACCATCTGTAGTCAT
GTACAGAATATGATCAAGGGTGTTACACTGGGCTTCCGTTACAAGATGAGGTCTGTGTAT
GCTCACTTCCCCATCAACGTCGTTATTCAGGAGAATGGTTCTCTTGTTGAAATCCGAAAT
TTTTTGGGTGAAAAATATATCCGCAGGGTTCGGATGAGGCCAGGGGTTGCTTGTTCAGTA
TCTCAAGCCCAGAAAGATGAGCTGATTTTAGAAGGAAATGACATTGAACTTGTATCAAAT
TCAGCTGCTTTGATTCAGCAAGCCACAACTGTTAAGAACAAGGATATCAGAAAATTTTTG
GATGGTATCTATGTTTCTGAAAAAGGAACAGTTCAGCAGGCTGATGAGTAAGATTTGAGT
TGTCCCGGCTACAGAAACAACAAGATGCCAGATGATTCTTCACATTCATTTGTGATGTTT
TACGATACAATAAAAAGTCTATTGACTTAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
gul (11.1881) |
|
mgp (10.1499) |
|
lyg (9.05098) |
|
ova (8.78099) |
|
csk (8.72625) |
|
bla (7.95822) |
|
tra (7.87789) |
|
thg (7.73425) |
|
ski (7.48349) |
|
sug (7.2556) |
|
aor (7.22515) |
|
fat (7.22394) |
|
cbe (6.2201) |
|
pan (6.13497) |
|
sag (5.66417) |
|
ret (5.4068) |
|
lin (5.3873) |
|
sto (5.03507) |
|
mcp (4.94881) |
|
eje (4.64519) |
|
ste (4.59708) |
|
cmu (4.47344) |
|
pgl (4.38389) |
|
sin (4.19874) |
|
mga (4.16533) |
|
cbr (3.96724) |
|
kid (3.76232) |
|
rec (3.63448) |
|
mgm (3.60685) |
|
ese (3.54206) |
|
ldo (3.49209) |
|
ssp (3.38799) |
|
med (3.37131) |
|
nje (3.3184) |
|
hea (3.27198) |
|
nco (3.23468) |
|
spc (3.17424) |
|
lun (3.16027) |
|
nca (3.01122) |
|
jca (2.96296) |
|
fty (2.81343) |
|
lnt (2.70386) |
|
bfe (2.69744) |
|
nlu (2.68353) |
|
hlv (2.64587) |
|
isp (2.55639) |
|
amn (2.50627) |
|
elu (2.31214) |
|
nep (2.2071) |
|
eru (2.16086) |
|
sme (2.13806) |
|
ill (2.10711) |
|
ece (2.06375) |
|
fco (2.0437) |
|
pty (1.998) |
|
fce (1.90114) |
|
tes (1.87032) |
|
cut (1.86916) |
|
cte (1.75644) |
|
nmm (1.59363) |
|
ton (1.5795) |
|
fbs (1.57812) |
|
pro (1.5361) |
|
fli (1.42017) |
|
ecc (1.38042) |
|
vin (1.33023) |
|
ebs (1.30131) |
|
jej (1.28598) |
|
eli (1.21451) |
|
duo (1.20961) |
|
spl (1.14548) |
|
nms (1.06929) |
|
mas (1.05152) |
|
eye (0.852515) |
|
col (0.780031) |
|
che (0.68157) |
|
eep (0.61282) |
|
fcc (0.593354) |
|
ute (0.531138) |
|
cag (0.453583) |
|
liv (0.438853) |
|
hyp (0.42851) |
|
nbm (0.397298) |
|
cov (0.396458) |
|
cly (0.361925) |
|
fhi (0.339155) |
|
cje (0.330469) |
|
tbr (0.308356) |
|
cli (0.305623) |
|
cki (0.165235) |
|
csp (0.161186) |
|
cst (0.140036) |
|
pla (0.133672) |
|
cbl (0.114797) |
|
cty (0.10408) |
|
gul (11.1881) |
|
mgp (10.1499) |
|
lyg (9.05098) |
|
ova (8.78099) |
|
csk (8.72625) |
|
bla (7.95822) |
|
tra (7.87789) |
|
thg (7.73425) |
|
ski (7.48349) |
|
sug (7.2556) |
|
aor (7.22515) |
|
fat (7.22394) |
|
cbe (6.2201) |
|
pan (6.13497) |
|
sag (5.66417) |
|
ret (5.4068) |
|
lin (5.3873) |
|
sto (5.03507) |
|
mcp (4.94881) |
|
eje (4.64519) |
|
ste (4.59708) |
|
cmu (4.47344) |
|
pgl (4.38389) |
|
sin (4.19874) |
|
mga (4.16533) |
|
cbr (3.96724) |
|
kid (3.76232) |
|
rec (3.63448) |
|
mgm (3.60685) |
|
ese (3.54206) |
|
ldo (3.49209) |
|
ssp (3.38799) |
|
med (3.37131) |
|
nje (3.3184) |
|
hea (3.27198) |
|
nco (3.23468) |
|
spc (3.17424) |
|
lun (3.16027) |
|
nca (3.01122) |
|
jca (2.96296) |
|
fty (2.81343) |
|
lnt (2.70386) |
|
bfe (2.69744) |
|
nlu (2.68353) |
|
hlv (2.64587) |
|
isp (2.55639) |
|
amn (2.50627) |
|
elu (2.31214) |
|
nep (2.2071) |
|
eru (2.16086) |
|
sme (2.13806) |
|
ill (2.10711) |
|
ece (2.06375) |
|
fco (2.0437) |
|
pty (1.998) |
|
fce (1.90114) |
|
tes (1.87032) |
|
cut (1.86916) |
|
cte (1.75644) |
|
nmm (1.59363) |
|
ton (1.5795) |
|
fbs (1.57812) |
|
pro (1.5361) |
|
fli (1.42017) |
|
ecc (1.38042) |
|
vin (1.33023) |
|
ebs (1.30131) |
|
jej (1.28598) |
|
eli (1.21451) |
|
duo (1.20961) |
|
spl (1.14548) |
|
nms (1.06929) |
|
mas (1.05152) |
|
eye (0.852515) |
|
col (0.780031) |
|
che (0.68157) |
|
eep (0.61282) |
|
fcc (0.593354) |
|
ute (0.531138) |
|
cag (0.453583) |
|
liv (0.438853) |
|
hyp (0.42851) |
|
nbm (0.397298) |
|
cov (0.396458) |
|
cly (0.361925) |
|
fhi (0.339155) |
|
cje (0.330469) |
|
tbr (0.308356) |
|
cli (0.305623) |
|
cki (0.165235) |
|
csp (0.161186) |
|
cst (0.140036) |
|
pla (0.133672) |
|
cbl (0.114797) |
|
cty (0.10408) |
