Non-Coding RNA Search

Ss1.1-rfat0140_k14.5

Sequence:


               
               AATTTCTTTGAATATATAAACCATTAGTTGGCTGTGGGAGTTTTCCCTTTCCACATTGAT
AAATGCCTTTCTGTGTTTCTGAATCAGAAGCAAATGATAACAGAAATATGTCCAACAAGA
CAAGATTAGTTTAAATGGCTAAGAACATCTAGTCCACATTGTCTTGTCAGCCAGCAATTG
TCATGTAAACTATCATTTTTAAGAGTGCCACTGTGTGGATTTTTTTTTCAAGTGGTTATT
ACATTAAAATTACCTCATACTGAGGTTTTTGCACTGAAATATCACAGTTTCAGATTTCAT
GGTTAATGTTATGTATGTGTGTTTTTAAAGAAAACTTGCATTTTCAATAGTTGATCCTAA
ATTCATAAACTGCACTTCTTTACCCTGGTAAAAGTGTTTTTGTGATTATTGTGAATTGCT
GTAGTTAACTTTGAATGTCAAACTTTATTTAGAAATACAAAATTTACCCTTTAAGATATA
AATGGTGAGTGTGTGTACCCGATATTTCAAATTAAATTTCACATTCTAAATTTAAGTAAC
AAGATTGTAATTAACCTAAAAGTCAGTTGAGTAAATGCAATAAATATTGGTTGCTCATAT
ATGCCAGAAGTAACTTGAAGTTTTTCATTTACTTTCAATAGCACAAGATTCCTTAATTAA
TTAGGGAATAATTATGACTTCCTTTCCAATTAAGCACTACAGGTCAAGTATTGTAGCTCC
CCCAAAAGAAGGGCGGGGGGAGAAGTCGTCGGGGAGTGTTCAAGTTAACACAGAAATACG
TGTTGGTAGTACCTCCTTTACCATAGAGTTTGTTCCCTGTGATTCGGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AATTTCTTTGAATATATAAACCATTAGTTGGCTGTGGGAGTTTTCCCTTTCCACATTGAT
AAATGCCTTTCTGTGTTTCTGAATCAGAAGCAAATGATAACAGAAATATGTCCAACAAGA
CAAGATTAGTTTAAATGGCTAAGAACATCTAGTCCACATTGTCTTGTCAGCCAGCAATTG
TCATGTAAACTATCATTTTTAAGAGTGCCACTGTGTGGATTTTTTTTTCAAGTGGTTATT
ACATTAAAATTACCTCATACTGAGGTTTTTGCACTGAAATATCACAGTTTCAGATTTCAT
GGTTAATGTTATGTATGTGTGTTTTTAAAGAAAACTTGCATTTTCAATAGTTGATCCTAA
ATTCATAAACTGCACTTCTTTACCCTGGTAAAAGTGTTTTTGTGATTATTGTGAATTGCT
GTAGTTAACTTTGAATGTCAAACTTTATTTAGAAATACAAAATTTACCCTTTAAGATATA
AATGGTGAGTGTGTGTACCCGATATTTCAAATTAAATTTCACATTCTAAATTTAAGTAAC
AAGATTGTAATTAACCTAAAAGTCAGTTGAGTAAATGCAATAAATATTGGTTGCTCATAT
ATGCCAGAAGTAACTTGAAGTTTTTCATTTACTTTCAATAGCACAAGATTCCTTAATTAA
TTAGGGAATAATTATGACTTCCTTTCCAATTAAGCACTACAGGTCAAGTATTGTAGCTCC
CCCAAAAGAAGGGCGGGGGGAGAAGTCGTCGGGGAGTGTTCAAGTTAACACAGAAATACG
TGTTGGTAGTACCTCCTTTACCATAGAGTTTGTTCCCTGTGATTCGGG

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               5-118, - strand, RNAz p=0.925421
               

               
               184-320, + strand, RNAz p=0.979857

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               5-118, - strand, RNAz p=0.925421
               

               
               184-320, + strand, RNAz p=0.979857

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               5-827, gnl|bosTau2|chr4 (28003687-28004520)
               

               
               5-827, gnl|Hg17|chr7 (112054705-112053875)
               

               
               5-827, gnl|Mm7|chr6 (13568505-13567644)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               5-827, gnl|bosTau2|chr4 (28003687-28004520)
               

               
               5-827, gnl|Hg17|chr7 (112054705-112053875)
               

               
               5-827, gnl|Mm7|chr6 (13568505-13567644)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               fat (0.147427)
               

               
               pla (0.133672)

Expressed library(ies): 2 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fat (0.147427)
               

               
               pla (0.133672)

	5-118, - strand, RNAz p=0.925421
	184-320, + strand, RNAz p=0.979857

	5-827, gnl\|bosTau2\|chr4 (28003687-28004520)
	5-827, gnl\|Hg17\|chr7 (112054705-112053875)
	5-827, gnl\|Mm7\|chr6 (13568505-13567644)