Non-Coding RNA Search

Ss1.1-rfat0140_k2.5

Sequence:


               
               GAAAGATCTGGGGATACTAATTTTTGAAAAGCAGCTGGCTTTGGAGACTTGATTTAAAAA
GCAAAGATATTCCTGCTCTTCATGATAGCCCACATATTTCTGTGGGGTCACAATTGAAAA
TGCTATATCGGCACCCCTCCAACTCAGGACCTTTCTCCCCCTAGGTCAACTGAATTCTTT
CCCCTCCACGAAAAGTTTTCAGGCAGAGCAGATGCTGTGTCCCTCTTGTGGCAGCGTGGT
TCTGATGGCTCTACAGACGTGTGCGGGTTCATAAAACAGGAAAGTTAACTAGCAGTTGGA
AAGTACAGCTTATTCCTCCCACCTGTTGCAGTCACGTGGGGATGTTATTTTAAACAGTGT
GCCCATGTGTCATTCTGTCCAGCTGGTCTACCAGCCCAGGTTCCATACCTGACCATCCAC
AGATGGAGAGAAGGGGCTTCGGAGGAGCTTTATGAATCTCTTCAAAATCCTTCCGTTTCA
TCACTCAGATTCCTGAGCAGGAGTTGGGAATACTGTTCATCTTTCCTATCCTCTCTTCTT
TCTCTCACTGTGAAAAATCATAGTCAACCCCAAGTCATACACTGGACCCATCGCCTGCTG
GGACAGGACTGTGGGTTTCTTGGTCACATCTGTGTTGGTGCTCAATGCAGTGTAGACGTG
TTTGAAAATAAAACAGACGATTGTGTATAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAAAGATCTGGGGATACTAATTTTTGAAAAGCAGCTGGCTTTGGAGACTTGATTTAAAAA
GCAAAGATATTCCTGCTCTTCATGATAGCCCACATATTTCTGTGGGGTCACAATTGAAAA
TGCTATATCGGCACCCCTCCAACTCAGGACCTTTCTCCCCCTAGGTCAACTGAATTCTTT
CCCCTCCACGAAAAGTTTTCAGGCAGAGCAGATGCTGTGTCCCTCTTGTGGCAGCGTGGT
TCTGATGGCTCTACAGACGTGTGCGGGTTCATAAAACAGGAAAGTTAACTAGCAGTTGGA
AAGTACAGCTTATTCCTCCCACCTGTTGCAGTCACGTGGGGATGTTATTTTAAACAGTGT
GCCCATGTGTCATTCTGTCCAGCTGGTCTACCAGCCCAGGTTCCATACCTGACCATCCAC
AGATGGAGAGAAGGGGCTTCGGAGGAGCTTTATGAATCTCTTCAAAATCCTTCCGTTTCA
TCACTCAGATTCCTGAGCAGGAGTTGGGAATACTGTTCATCTTTCCTATCCTCTCTTCTT
TCTCTCACTGTGAAAAATCATAGTCAACCCCAAGTCATACACTGGACCCATCGCCTGCTG
GGACAGGACTGTGGGTTTCTTGGTCACATCTGTGTTGGTGCTCAATGCAGTGTAGACGTG
TTTGAAAATAAAACAGACGATTGTGTATAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               459-690, - strand, RNAz p=0.999008

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               459-690, - strand, RNAz p=0.999008

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-690, gnl|bosTau2|chr16 (40359047-40358355)
               

               
               1-690, gnl|Hg17|chr1 (13688743-13689758)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-690, gnl|bosTau2|chr16 (40359047-40358355)
               

               
               1-690, gnl|Hg17|chr1 (13688743-13689758)

Expressed library(ies): 9 entry(ies)

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Expressed library(ies): 9 entry(ies)

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               hea (0.408998)
               

               
               fat (0.294855)
               

               
               nca (0.273748)
               

               
               ldo (0.194005)
               

               
               mgm (0.180343)
               

               
               pty (0.142714)
               

               
               ste (0.135208)
               

               
               ute (0.132784)
               

               
               pgl (0.118483)

Expressed library(ies): 9 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hea (0.408998)
               

               
               fat (0.294855)
               

               
               nca (0.273748)
               

               
               ldo (0.194005)
               

               
               mgm (0.180343)
               

               
               pty (0.142714)
               

               
               ste (0.135208)
               

               
               ute (0.132784)
               

               
               pgl (0.118483)

	1-690, gnl\|bosTau2\|chr16 (40359047-40358355)
	1-690, gnl\|Hg17\|chr1 (13688743-13689758)

	hea (0.408998)
	fat (0.294855)
	nca (0.273748)
	ldo (0.194005)
	mgm (0.180343)
	pty (0.142714)
	ste (0.135208)
	ute (0.132784)
	pgl (0.118483)