Non-Coding RNA Search

Ss1.1-rfat0140_k4.5

Sequence:


               
               GAATGTTGTCATCCAGGTGGCTTTAGGGTCCTGAGGAGTAGAAGAGAAGGACGCCACTGG
GGAGGTCTGACGGATGGATCTAATTTGTGTAGGAGTTCCCTGTAGATAAATTACTGATCT
CCCAACTACTATCCCCAGTATGTAATGGCTAAATTAATATGTAATCAACTGCATTGTATC
TAAAGCCTTAGAACTAGTCAGGTGCTCCCCCCACCCAATACCATTTCTTACCCTCTAATC
CTACCTGATCTTTAACAAAGCATTAATAATTCTGAGGATAATCTCTATTTTGTTGTGCTT
TTTTGTAACTGTTTTAAATAAATCAATTTGTACTGTATATTTGTACTTTTGTGAGATCCT
TTTTGCTGTTTTACCATTTTAAGTCTCTGTACTTGGCTACACACAGATTGTATTTTTATT
GTTAATGCTCTTCTTATGGATACCTGCATTTAACTTGTGGACTATGTAAACACAATATAT
ATATATATATAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAATGTTGTCATCCAGGTGGCTTTAGGGTCCTGAGGAGTAGAAGAGAAGGACGCCACTGG
GGAGGTCTGACGGATGGATCTAATTTGTGTAGGAGTTCCCTGTAGATAAATTACTGATCT
CCCAACTACTATCCCCAGTATGTAATGGCTAAATTAATATGTAATCAACTGCATTGTATC
TAAAGCCTTAGAACTAGTCAGGTGCTCCCCCCACCCAATACCATTTCTTACCCTCTAATC
CTACCTGATCTTTAACAAAGCATTAATAATTCTGAGGATAATCTCTATTTTGTTGTGCTT
TTTTGTAACTGTTTTAAATAAATCAATTTGTACTGTATATTTGTACTTTTGTGAGATCCT
TTTTGCTGTTTTACCATTTTAAGTCTCTGTACTTGGCTACACACAGATTGTATTTTTATT
GTTAATGCTCTTCTTATGGATACCTGCATTTAACTTGTGGACTATGTAAACACAATATAT
ATATATATATAT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               42-161, + strand, RNAz p=0.910366

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               42-161, + strand, RNAz p=0.910366

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               3-492, gnl|bosTau2|chr18 (32346154-32345668)
               

               
               3-492, gnl|Hg17|chr16 (70448216-70448694)
               

               
               3-492, gnl|Mm7|chr8 (108327106-108326626)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-492, gnl|bosTau2|chr18 (32346154-32345668)
               

               
               3-492, gnl|Hg17|chr16 (70448216-70448694)
               

               
               3-492, gnl|Mm7|chr8 (108327106-108326626)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               cmu (0.186393)
               

               
               rec (0.17307)
               

               
               mga (0.160205)
               

               
               fat (0.147427)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cmu (0.186393)
               

               
               rec (0.17307)
               

               
               mga (0.160205)
               

               
               fat (0.147427)

	3-492, gnl\|bosTau2\|chr18 (32346154-32345668)
	3-492, gnl\|Hg17\|chr16 (70448216-70448694)
	3-492, gnl\|Mm7\|chr8 (108327106-108326626)