Non-Coding RNA Search

Ss1.1-rfat0140_k8.5

Sequence:


               
               TGATATCCTACAGCTTCTGAAGAAGAATGGTGGCATCGTGATGGTGTCCTTGTCCGTGGG
GGTGGTACAGTGCAACTTGTTAGCCAACGTGTCTACTGTGGCAGATCACTTCGACCACAT
CAGGGCAGTCATTGGATCCAAGTTCATCGGGATTGGTGGAGATTATGATGGGGCTGGCCG
GTTCCCACAGGGGCTGGAGGATGTGTCCACATACCCGGTACTGATAGAGGAGCTGCTGAG
CCGTGGCTGGAGTGAGGAAGAGCTCTGGGGTGTCCTTCGAGGAAACCTGCTGCGGGTCTT
CCAACAGGTGGAACAGGTACAGGAAGAAAGCAAGGGGCAGAGTCCTTTGGAGGATGAGTT
CCCGGATGAGCAGCTGGGCAGCTCTTGCCGTTCCATCCTCCCGCGTCTGCATCAGAGGCA
GAATCTGGCTCCAGACCAGAAACTAACCAAGACTCCTATGAGTAGGAAATCCATTTTGCC
ACCTAAGTGGCCATTCTCAAAATCTTCACCCCACATGGCCCCAGGCTTCACAGTTATTAC
TGCCTTCCCAATCATCATTCTGTGGCTCTGGTGATTCACTTAATCCTGCCAGATGTCACT
TTGGCACCACAGACATCCCACAACCTTCCCTCACATGCAAGCACAAACATTTCCTGAAAA
TAAATGTTTTAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGATATCCTACAGCTTCTGAAGAAGAATGGTGGCATCGTGATGGTGTCCTTGTCCGTGGG
GGTGGTACAGTGCAACTTGTTAGCCAACGTGTCTACTGTGGCAGATCACTTCGACCACAT
CAGGGCAGTCATTGGATCCAAGTTCATCGGGATTGGTGGAGATTATGATGGGGCTGGCCG
GTTCCCACAGGGGCTGGAGGATGTGTCCACATACCCGGTACTGATAGAGGAGCTGCTGAG
CCGTGGCTGGAGTGAGGAAGAGCTCTGGGGTGTCCTTCGAGGAAACCTGCTGCGGGTCTT
CCAACAGGTGGAACAGGTACAGGAAGAAAGCAAGGGGCAGAGTCCTTTGGAGGATGAGTT
CCCGGATGAGCAGCTGGGCAGCTCTTGCCGTTCCATCCTCCCGCGTCTGCATCAGAGGCA
GAATCTGGCTCCAGACCAGAAACTAACCAAGACTCCTATGAGTAGGAAATCCATTTTGCC
ACCTAAGTGGCCATTCTCAAAATCTTCACCCCACATGGCCCCAGGCTTCACAGTTATTAC
TGCCTTCCCAATCATCATTCTGTGGCTCTGGTGATTCACTTAATCCTGCCAGATGTCACT
TTGGCACCACAGACATCCCACAACCTTCCCTCACATGCAAGCACAAACATTTCCTGAAAA
TAAATGTTTTAG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               558-669, - strand, RNAz p=0.517623

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               558-669, - strand, RNAz p=0.517623

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               314-669, gnl|bosTau2|chr18 (14896691-14897045)
               

               
               314-669, gnl|Hg17|chr16 (66579167-66578810)
               

               
               314-669, gnl|Mm7|chr8 (104584139-104583812)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               314-669, gnl|bosTau2|chr18 (14896691-14897045)
               

               
               314-669, gnl|Hg17|chr16 (66579167-66578810)
               

               
               314-669, gnl|Mm7|chr8 (104584139-104583812)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               fat (0.147427)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fat (0.147427)

	314-669, gnl\|bosTau2\|chr18 (14896691-14897045)
	314-669, gnl\|Hg17\|chr16 (66579167-66578810)
	314-669, gnl\|Mm7\|chr8 (104584139-104583812)