Non-Coding RNA Search

Ss1.1-rfat0140_o2.5

Sequence:


               
               GGACCGCGGCGAAGAAGGAAGGACGGTCTTCCGTGCCTTGGATGCTCTGCCGGGAGACAG
CAAGTTGAGTGTGCGTCCCGGCCCCGGGAGAAGAGGCGGCCGCCGCCCGCCAGCCATGGC
CTATCATCCTTACTGCAGAGGATGGGAAGCTGATGACCAGTAGGACTGAACATCTGTTCT
ATTGACAGACACCCCCCTCCTCCATCACAACTGTGGATTACCTGTCGGTCCCCGTGGTTT
CATACCTTCACTCACTCCTGCAGACCCAGAACAGTGACTTTGGGTCCTCCCTGCCCTGTC
TGGTGAAAGATGGCATCCAGTCTGACTTGCACCGGGGTCATCTGGGCTCTGCTCTCGTTC
CTTTGTGCTGCCACCTCCTGCGTGGGGTTCTTCATGCCTTACTGGCTGTGGGGATCGCAG
CTGGGCAAGCCCGTGTCCTTCGGTACTTTCCGGAGGTGCTCATATCCTGTGCACGATGAG
AGTCGGCAGATGATGGTGATGGTGGAGGAATGTGGGCGCTACGCCTCCTTCCAGGGCATC
CCCAGCGCAGAATGGAGGATCTGTACCATCGTGACAGGCCTGGGCTGTGGCCTCCTCCTC
CTGGTGGCGCTCACTGCCCTCATGGGCTGCTGTGTGTCGGAGCTCATCTCCAGGACAGTG
GGAAGAGTGGCTGGAGGAATTCAGTTCCTGGGGGGCTTGCTGATCGGTGCTGGCTGCGCC
CTCTACCCCCTGGGCTGGGACAGTGAGGAAGTTCGGCAGACTTGCGGCTACATTTCTGGC
CAGTTTGACCTGGGTAAGTGTGAAATCGGCTGGGCCTACTACTGCACGGGAGCAGGTGCT
GCAGCCGCCATGCTGCTATGCACGTGGCTGGCTTGTTTCTCAGGCAAGAAACAGAAGCAG
TACCCATACTGAGATGGAGCCACCAAGAGCCAGCGGGGGAGAAGACGAGCCAAAGGGGCT
AGGAGGGACCGAAGCAGTCAGCTACTTTCAAAAGGTGGAATAGTGGTTCTACACCATACA
GCACTCATGAAATAAAACCCAGTGGGATCAGAAACATTATACTATGTGGAAGGGTTGGGC
AAGACTTTTGAAAGAAATGTAGAGCATGGAATGGTAGAGAAAAATGGACCAAAGGCTAAA
AATATTGCAGGGTGTCGGGTATTTCTATTCTACAGAATATTGTTAATGTAGAACACATAC
ATACACATGACAAATCTATATATGCAAACAAGGAATTTTTTTTTAAGGATGATGACTCAG
ACTCAAAAGGGCTAGTAGAAACAGTATTATGTTAGGAAGCAGGGTAACCCATAGACGTTC
CCTGTAGGTCATGGCACTTCTGAAAGCACACGAGCACATACAGACATACACATCCACACA
CATGCCATACGCAAACTATGGTGTTGCACAGATTATACAAGAGTTTAGTGGTGCATTACT
CCTCTATCTTCCTTTTAATACCCATTTAAAATACAGTATTATCACTTTGTAAAGCATACA
TTAAACCTAATAAATGGATCCATAGGCCACTCTTCCAGTATTTTGTATATCCTGCACAAA
CTCTTTATGCCCTCAACACGTCTTCGGTGTTTACCTGGACCTTTAGAATTAAGCCTTTGT
ATTTCAATATTATTCAAAAATATGCAATATTTCTCTGAGTAGCTTCTGCTATGATATTCT
TATGAAGTAAAGGGGCAACTTTCTGGCCTCTGTAGGAGAGAATTCAGTTGAAGATGTGAG
AGTAACGAGAGACATGTTCGGGTCATTAGATCTTGTTTCCTTTTGTCCATTATTGTCCTG
TGCTGTACCACATTTATTCCAATATCCATTTTGTAAAAAATTTAAAAGTGCTATTTTGTT
TGTATCTGAAAATCTCTGTGAATAAATTCTCTCTTTGATCAATAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGACCGCGGCGAAGAAGGAAGGACGGTCTTCCGTGCCTTGGATGCTCTGCCGGGAGACAG
CAAGTTGAGTGTGCGTCCCGGCCCCGGGAGAAGAGGCGGCCGCCGCCCGCCAGCCATGGC
CTATCATCCTTACTGCAGAGGATGGGAAGCTGATGACCAGTAGGACTGAACATCTGTTCT
ATTGACAGACACCCCCCTCCTCCATCACAACTGTGGATTACCTGTCGGTCCCCGTGGTTT
CATACCTTCACTCACTCCTGCAGACCCAGAACAGTGACTTTGGGTCCTCCCTGCCCTGTC
TGGTGAAAGATGGCATCCAGTCTGACTTGCACCGGGGTCATCTGGGCTCTGCTCTCGTTC
CTTTGTGCTGCCACCTCCTGCGTGGGGTTCTTCATGCCTTACTGGCTGTGGGGATCGCAG
CTGGGCAAGCCCGTGTCCTTCGGTACTTTCCGGAGGTGCTCATATCCTGTGCACGATGAG
AGTCGGCAGATGATGGTGATGGTGGAGGAATGTGGGCGCTACGCCTCCTTCCAGGGCATC
CCCAGCGCAGAATGGAGGATCTGTACCATCGTGACAGGCCTGGGCTGTGGCCTCCTCCTC
CTGGTGGCGCTCACTGCCCTCATGGGCTGCTGTGTGTCGGAGCTCATCTCCAGGACAGTG
GGAAGAGTGGCTGGAGGAATTCAGTTCCTGGGGGGCTTGCTGATCGGTGCTGGCTGCGCC
CTCTACCCCCTGGGCTGGGACAGTGAGGAAGTTCGGCAGACTTGCGGCTACATTTCTGGC
CAGTTTGACCTGGGTAAGTGTGAAATCGGCTGGGCCTACTACTGCACGGGAGCAGGTGCT
GCAGCCGCCATGCTGCTATGCACGTGGCTGGCTTGTTTCTCAGGCAAGAAACAGAAGCAG
TACCCATACTGAGATGGAGCCACCAAGAGCCAGCGGGGGAGAAGACGAGCCAAAGGGGCT
AGGAGGGACCGAAGCAGTCAGCTACTTTCAAAAGGTGGAATAGTGGTTCTACACCATACA
GCACTCATGAAATAAAACCCAGTGGGATCAGAAACATTATACTATGTGGAAGGGTTGGGC
AAGACTTTTGAAAGAAATGTAGAGCATGGAATGGTAGAGAAAAATGGACCAAAGGCTAAA
AATATTGCAGGGTGTCGGGTATTTCTATTCTACAGAATATTGTTAATGTAGAACACATAC
ATACACATGACAAATCTATATATGCAAACAAGGAATTTTTTTTTAAGGATGATGACTCAG
ACTCAAAAGGGCTAGTAGAAACAGTATTATGTTAGGAAGCAGGGTAACCCATAGACGTTC
CCTGTAGGTCATGGCACTTCTGAAAGCACACGAGCACATACAGACATACACATCCACACA
CATGCCATACGCAAACTATGGTGTTGCACAGATTATACAAGAGTTTAGTGGTGCATTACT
CCTCTATCTTCCTTTTAATACCCATTTAAAATACAGTATTATCACTTTGTAAAGCATACA
TTAAACCTAATAAATGGATCCATAGGCCACTCTTCCAGTATTTTGTATATCCTGCACAAA
CTCTTTATGCCCTCAACACGTCTTCGGTGTTTACCTGGACCTTTAGAATTAAGCCTTTGT
ATTTCAATATTATTCAAAAATATGCAATATTTCTCTGAGTAGCTTCTGCTATGATATTCT
TATGAAGTAAAGGGGCAACTTTCTGGCCTCTGTAGGAGAGAATTCAGTTGAAGATGTGAG
AGTAACGAGAGACATGTTCGGGTCATTAGATCTTGTTTCCTTTTGTCCATTATTGTCCTG
TGCTGTACCACATTTATTCCAATATCCATTTTGTAAAAAATTTAAAAGTGCTATTTTGTT
TGTATCTGAAAATCTCTGTGAATAAATTCTCTCTTTGATCAATAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               Q9Y693_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q9Y693_HUMAN

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               114-695, gnl|bosTau2|chr12 (12137992-12137412)
               

               
               114-695, gnl|Hg17|chr13 (39073531-39072968)
               

               
               114-695, gnl|Mm7|chr3 (53169710-53170287)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               114-695, gnl|bosTau2|chr12 (12137992-12137412)
               

               
               114-695, gnl|Hg17|chr13 (39073531-39072968)
               

               
               114-695, gnl|Mm7|chr3 (53169710-53170287)

Expressed library(ies): 40 entry(ies)

More info

Expressed library(ies): 40 entry(ies)

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               aor (2.73384)
               

               
               liv (2.04798)
               

               
               gul (1.5983)
               

               
               bla (0.87043)
               

               
               lin (0.728014)
               

               
               cbe (0.717703)
               

               
               ski (0.586941)
               

               
               spc (0.453463)
               

               
               ova (0.387397)
               

               
               ret (0.3862)
               

               
               elu (0.385356)
               

               
               nlu (0.383362)
               

               
               rec (0.346141)
               

               
               jca (0.34188)
               

               
               cki (0.330469)
               

               
               nco (0.323468)
               

               
               bfe (0.299715)
               

               
               cte (0.29274)
               

               
               csk (0.281492)
               

               
               eru (0.240096)
               

               
               clu (0.239292)
               

               
               sin (0.174948)
               

               
               eye (0.170503)
               

               
               mga (0.160205)
               

               
               fco (0.157208)
               

               
               isp (0.150376)
               

               
               fat (0.147427)
               

               
               spl (0.143184)
               

               
               cst (0.140036)
               

               
               che (0.136314)
               

               
               ssp (0.13552)
               

               
               ste (0.135208)
               

               
               pla (0.133672)
               

               
               lyg (0.133103)
               

               
               kid (0.129735)
               

               
               sug (0.127291)
               

               
               eep (0.122564)
               

               
               ebs (0.118301)
               

               
               cty (0.10408)
               

               
               eje (0.0988338)

Expressed library(ies): 40 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               aor (2.73384)
               

               
               liv (2.04798)
               

               
               gul (1.5983)
               

               
               bla (0.87043)
               

               
               lin (0.728014)
               

               
               cbe (0.717703)
               

               
               ski (0.586941)
               

               
               spc (0.453463)
               

               
               ova (0.387397)
               

               
               ret (0.3862)
               

               
               elu (0.385356)
               

               
               nlu (0.383362)
               

               
               rec (0.346141)
               

               
               jca (0.34188)
               

               
               cki (0.330469)
               

               
               nco (0.323468)
               

               
               bfe (0.299715)
               

               
               cte (0.29274)
               

               
               csk (0.281492)
               

               
               eru (0.240096)
               

               
               clu (0.239292)
               

               
               sin (0.174948)
               

               
               eye (0.170503)
               

               
               mga (0.160205)
               

               
               fco (0.157208)
               

               
               isp (0.150376)
               

               
               fat (0.147427)
               

               
               spl (0.143184)
               

               
               cst (0.140036)
               

               
               che (0.136314)
               

               
               ssp (0.13552)
               

               
               ste (0.135208)
               

               
               pla (0.133672)
               

               
               lyg (0.133103)
               

               
               kid (0.129735)
               

               
               sug (0.127291)
               

               
               eep (0.122564)
               

               
               ebs (0.118301)
               

               
               cty (0.10408)
               

               
               eje (0.0988338)

	114-695, gnl\|bosTau2\|chr12 (12137992-12137412)
	114-695, gnl\|Hg17\|chr13 (39073531-39072968)
	114-695, gnl\|Mm7\|chr3 (53169710-53170287)

	aor (2.73384)
	liv (2.04798)
	gul (1.5983)
	bla (0.87043)
	lin (0.728014)
	cbe (0.717703)
	ski (0.586941)
	spc (0.453463)
	ova (0.387397)
	ret (0.3862)
	elu (0.385356)
	nlu (0.383362)
	rec (0.346141)
	jca (0.34188)
	cki (0.330469)
	nco (0.323468)
	bfe (0.299715)
	cte (0.29274)
	csk (0.281492)
	eru (0.240096)
	clu (0.239292)
	sin (0.174948)
	eye (0.170503)
	mga (0.160205)
	fco (0.157208)
	isp (0.150376)
	fat (0.147427)
	spl (0.143184)
	cst (0.140036)
	che (0.136314)
	ssp (0.13552)
	ste (0.135208)
	pla (0.133672)
	lyg (0.133103)
	kid (0.129735)
	sug (0.127291)
	eep (0.122564)
	ebs (0.118301)
	cty (0.10408)
	eje (0.0988338)