Non-Coding RNA Search

Ss1.1-rfbs3908b_o20.5

Sequence:


               
               CTGGATTGTTCTCGGGATTTCCGGCCATTTCTTTGTGCACTCTATGCTCCTATTTGTATG
GAATATGGACGTGTCACACTTCCCTGCCGTAGGCTATGTCAGCGGGCTTATAGTGAGTGT
TCGAAGCTCATGGAGATGTTTGGTGTTCCTTGGCCTGAAGATATGGAATGTAGTAGGTTC
CCAGATTGTGATGAACCGTATCCTCGACTTGTGGATCTGAATTTAGCTGGAGATCCTACT
GAAGGAGCCCCAGTGGCTGTGCAGAGGGACTATGGTTTTGGGTGTCCCCGAGAGTTAAAA
ATTGATCCTGATCTTGGCTATTCTTTTTTGCACGTCCGTGATTGTTCACCTCCTTGTCCA
AATATGTACTTTAGGGAGAGAAGAACTTTCATTTGCTCGATATTTCATAGGATTGATTTC
AATCATTTGCCTCTCTGCCACATGGTTTACTTTTTTAACTTTTTGGATTGATGTCACAAG
ATTCCGTTATCCTGAAAGACCTATTATATTTTATGCAGTCTGCTACATGATGGTGTCGTT
AATTTTCTTCATTGGGTTTTTGCTTGAGGACCGAGTAGCCTGCAATGCATCAAGCCCTGC
ACAGTATAAGGCTTCCACAGTGACACAAGGATCTCATAATAAAGCCTGTACCATGCTTTT
TATGGTACTCTATTTTTTTACTATGGCTGGAAGCGTTTGGTGGGTAATTCTTACCATCAC
ATGGTTCTTGGCGGCTGTGCCAAAGTGGGGTAGTGAAGCTATTGAGAAGAAAGCATTGCT
GTTTCACGCCAGCGCATGGGGCATCCCCGGAACTCTAACTATCATCCTTTTAGCGATGAA
TAAAATTGAAGGTGACAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGGATTGTTCTCGGGATTTCCGGCCATTTCTTTGTGCACTCTATGCTCCTATTTGTATG
GAATATGGACGTGTCACACTTCCCTGCCGTAGGCTATGTCAGCGGGCTTATAGTGAGTGT
TCGAAGCTCATGGAGATGTTTGGTGTTCCTTGGCCTGAAGATATGGAATGTAGTAGGTTC
CCAGATTGTGATGAACCGTATCCTCGACTTGTGGATCTGAATTTAGCTGGAGATCCTACT
GAAGGAGCCCCAGTGGCTGTGCAGAGGGACTATGGTTTTGGGTGTCCCCGAGAGTTAAAA
ATTGATCCTGATCTTGGCTATTCTTTTTTGCACGTCCGTGATTGTTCACCTCCTTGTCCA
AATATGTACTTTAGGGAGAGAAGAACTTTCATTTGCTCGATATTTCATAGGATTGATTTC
AATCATTTGCCTCTCTGCCACATGGTTTACTTTTTTAACTTTTTGGATTGATGTCACAAG
ATTCCGTTATCCTGAAAGACCTATTATATTTTATGCAGTCTGCTACATGATGGTGTCGTT
AATTTTCTTCATTGGGTTTTTGCTTGAGGACCGAGTAGCCTGCAATGCATCAAGCCCTGC
ACAGTATAAGGCTTCCACAGTGACACAAGGATCTCATAATAAAGCCTGTACCATGCTTTT
TATGGTACTCTATTTTTTTACTATGGCTGGAAGCGTTTGGTGGGTAATTCTTACCATCAC
ATGGTTCTTGGCGGCTGTGCCAAAGTGGGGTAGTGAAGCTATTGAGAAGAAAGCATTGCT
GTTTCACGCCAGCGCATGGGGCATCCCCGGAACTCTAACTATCATCCTTTTAGCGATGAA
TAAAATTGAAGGTGACAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               635-793, + strand, RNAz p=0.981239

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               635-793, + strand, RNAz p=0.981239

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               196-874, gnl|bosTau2|chr11 (85413064-85413741)
               

               
               196-874, gnl|Hg17|chr8 (28440602-28441265)
               

               
               196-874, gnl|Mm7|chr14 (60095836-60095173)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               196-874, gnl|bosTau2|chr11 (85413064-85413741)
               

               
               196-874, gnl|Hg17|chr8 (28440602-28441265)
               

               
               196-874, gnl|Mm7|chr14 (60095836-60095173)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               fbs (0.175346)
               

               
               eye (0.170503)
               

               
               kid (0.129735)
               

               
               jca (0.11396)

Expressed library(ies): 4 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fbs (0.175346)
               

               
               eye (0.170503)
               

               
               kid (0.129735)
               

               
               jca (0.11396)

	196-874, gnl\|bosTau2\|chr11 (85413064-85413741)
	196-874, gnl\|Hg17\|chr8 (28440602-28441265)
	196-874, gnl\|Mm7\|chr14 (60095836-60095173)