Non-Coding RNA Search

Ss1.1-rfbs3911b_g17.5

Sequence:


               
               TTTTTTTTGCATCACCAGTACTTCAAGGGTGCAGTCACCTGTCTGTAATTGTGCAGTACA
GCTCTGTGGTGTATCAACCAATAGTTAAGCGTCTCAGTTGATTTCTGTAGCGTTTGACCT
CACGATGGCCCATGTCGGCTCTGACCCAACGGAGGAGGAAACCTCCTTGGCGTGGTGGCC
CTGGGGGAGTCGCCTCTGATGTAGCTGTTGGTGACATTAAACCTCCTGCGCTTCTGAGAA
TGAATGGGCTCCACCTGGAGGAAGTTGGCCTCCCCCCACGAGCATTTGAAACGTCTTCTC
ATGGACACGGGGAGGCCGGTTTGGTAGCAGAAAGCTTCTCTTCCCAAATTCTCTGTCATG
GTGTTGGGAACTCTGTCTCCTGGTTTGTTTTCGTTTCTACTGCTGTAAGAGTCCCTGCCC
CGACCATCTTCCTCTTCTGTTCCCCGTCCCTTTTATATATGCATATATGATGCTGTGAAC
AGAAATAAATTATTTATACAATCAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTTTTGCATCACCAGTACTTCAAGGGTGCAGTCACCTGTCTGTAATTGTGCAGTACA
GCTCTGTGGTGTATCAACCAATAGTTAAGCGTCTCAGTTGATTTCTGTAGCGTTTGACCT
CACGATGGCCCATGTCGGCTCTGACCCAACGGAGGAGGAAACCTCCTTGGCGTGGTGGCC
CTGGGGGAGTCGCCTCTGATGTAGCTGTTGGTGACATTAAACCTCCTGCGCTTCTGAGAA
TGAATGGGCTCCACCTGGAGGAAGTTGGCCTCCCCCCACGAGCATTTGAAACGTCTTCTC
ATGGACACGGGGAGGCCGGTTTGGTAGCAGAAAGCTTCTCTTCCCAAATTCTCTGTCATG
GTGTTGGGAACTCTGTCTCCTGGTTTGTTTTCGTTTCTACTGCTGTAAGAGTCCCTGCCC
CGACCATCTTCCTCTTCTGTTCCCCGTCCCTTTTATATATGCATATATGATGCTGTGAAC
AGAAATAAATTATTTATACAATCAAAAAAAAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               213-367, + strand, RNAz p=0.999763

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               213-367, + strand, RNAz p=0.999763

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_005737, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_005737, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-506, gnl|bosTau2|chr3 (78749805-78750313)
               

               
               1-506, gnl|Hg17|chr2 (235184207-235183685)
               

               
               1-506, gnl|Mm7|chr1 (88602319-88601847)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-506, gnl|bosTau2|chr3 (78749805-78750313)
               

               
               1-506, gnl|Hg17|chr2 (235184207-235183685)
               

               
               1-506, gnl|Mm7|chr1 (88602319-88601847)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               ece (0.229305)
               

               
               fbs (0.175346)
               

               
               lnt (0.142308)
               

               
               med (0.116252)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ece (0.229305)
               

               
               fbs (0.175346)
               

               
               lnt (0.142308)
               

               
               med (0.116252)

	1-506, gnl\|bosTau2\|chr3 (78749805-78750313)
	1-506, gnl\|Hg17\|chr2 (235184207-235183685)
	1-506, gnl\|Mm7\|chr1 (88602319-88601847)