Non-Coding RNA Search

Ss1.1-rfbs3911b_o21.5

Sequence:


               
               GGGACGGGCCTGTTTGAGCTCAAGCAGCCCCTGAGATAACAGCCTCCATGCACCCTGCGC
CTGGCCTGCTGAGAACCAGGGACTGGTGACAGCGCAGAGCCTGGCAGTAACCTTGGGGGA
GTCCAAAGAGCAACTGGCCTCTGGGCTGGACCAGCTTCACCTGGGAAGTGGCTGCATTGC
TCATCCTTGCTCCCCTCCATCTCAGGATGCAAACATTCCCCTCCAAGTCAGTCATCAAGG
TGGCCAGACCTCCCAGCTGTGCTACAGGAGGCCTCAGAGGGGGAATCCCTGCCCCCCGAC
CCCCCCACCCCAGGGTAGAGAGGACTCACTGCTATGAATAGGCAGTGACCACAGCCAGGA
TTCCTGGGACTCAGGCCATTCTTGCTGCCCCACGGCCCACTCCTCCCAGCTGCACCAGCC
CCTGGGGAAAGACTTCCCAAGGAGGCTTCCGCTCAGCCTCTTTCCCTGGATGAAGCACAG
CATGGCAGAGACGTCCACCCACGCAGCTTTTGTGCCTGAGGCAGAGCCCTGGCCCTGCTG
GTGTGTGGCTACGTGTCCTTCTAGACCAGATCAGCCCTGAGTCTGGGGCTGGTCTCTCTG
GGGCCACAGCTGCTCACTCCACGCAGAAAACTCTGAATCGCCAGTCCAGCCGCCTCTTTT
GAACAAGTTGCTGGGCTCCCTGCCTTGCTCTGCTCTCAGTCTAGCACTGAGGCCTGCATC
CCTCTCTACAGGCTGTACCCCATCCGGGGTCGTCCGGCCTCCCCTGATCTCTGGCACCAG
CAGCAGGGGGCCCTGGCATGAACAGAAAAGTCAGAGGACTTGTCCCAAGACTTTGTAAAA
TCAGGGGCTGGTTCTATTTTTGTCTAATGTTATTCCAGCTCAGGCTGAGTAATAAACATC
ACTGGGAGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAGGGGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGACGGGCCTGTTTGAGCTCAAGCAGCCCCTGAGATAACAGCCTCCATGCACCCTGCGC
CTGGCCTGCTGAGAACCAGGGACTGGTGACAGCGCAGAGCCTGGCAGTAACCTTGGGGGA
GTCCAAAGAGCAACTGGCCTCTGGGCTGGACCAGCTTCACCTGGGAAGTGGCTGCATTGC
TCATCCTTGCTCCCCTCCATCTCAGGATGCAAACATTCCCCTCCAAGTCAGTCATCAAGG
TGGCCAGACCTCCCAGCTGTGCTACAGGAGGCCTCAGAGGGGGAATCCCTGCCCCCCGAC
CCCCCCACCCCAGGGTAGAGAGGACTCACTGCTATGAATAGGCAGTGACCACAGCCAGGA
TTCCTGGGACTCAGGCCATTCTTGCTGCCCCACGGCCCACTCCTCCCAGCTGCACCAGCC
CCTGGGGAAAGACTTCCCAAGGAGGCTTCCGCTCAGCCTCTTTCCCTGGATGAAGCACAG
CATGGCAGAGACGTCCACCCACGCAGCTTTTGTGCCTGAGGCAGAGCCCTGGCCCTGCTG
GTGTGTGGCTACGTGTCCTTCTAGACCAGATCAGCCCTGAGTCTGGGGCTGGTCTCTCTG
GGGCCACAGCTGCTCACTCCACGCAGAAAACTCTGAATCGCCAGTCCAGCCGCCTCTTTT
GAACAAGTTGCTGGGCTCCCTGCCTTGCTCTGCTCTCAGTCTAGCACTGAGGCCTGCATC
CCTCTCTACAGGCTGTACCCCATCCGGGGTCGTCCGGCCTCCCCTGATCTCTGGCACCAG
CAGCAGGGGGCCCTGGCATGAACAGAAAAGTCAGAGGACTTGTCCCAAGACTTTGTAAAA
TCAGGGGCTGGTTCTATTTTTGTCTAATGTTATTCCAGCTCAGGCTGAGTAATAAACATC
ACTGGGAGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAGGGGG

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

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               86-523, gnl|bosTau2|chr11 (33894766-33895221)
               

               
               86-523, gnl|Hg17|chr2 (86166094-86165552)
               

               
               86-523, gnl|Mm7|chr6 (71996503-71996956)
               


               
               566-905, gnl|bosTau2|chr11 (33895236-33895565)
               

               
               566-905, gnl|Hg17|chr2 (86165537-86165155)
               

               
               566-905, gnl|Mm7|chr6 (71996971-71997271)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               86-523, gnl|bosTau2|chr11 (33894766-33895221)
               

               
               86-523, gnl|Hg17|chr2 (86166094-86165552)
               

               
               86-523, gnl|Mm7|chr6 (71996503-71996956)
               


               
               566-905, gnl|bosTau2|chr11 (33895236-33895565)
               

               
               566-905, gnl|Hg17|chr2 (86165537-86165155)
               

               
               566-905, gnl|Mm7|chr6 (71996971-71997271)

Expressed library(ies): 6 entry(ies)

More info

Expressed library(ies): 6 entry(ies)

Help | Less info


               
               jca (0.22792)
               

               
               fbs (0.175346)
               

               
               csp (0.161186)
               

               
               hyp (0.142837)
               

               
               cov (0.132153)
               

               
               eru (0.120048)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               jca (0.22792)
               

               
               fbs (0.175346)
               

               
               csp (0.161186)
               

               
               hyp (0.142837)
               

               
               cov (0.132153)
               

               
               eru (0.120048)

	86-523, gnl\|bosTau2\|chr11 (33894766-33895221)
	86-523, gnl\|Hg17\|chr2 (86166094-86165552)
	86-523, gnl\|Mm7\|chr6 (71996503-71996956)

	566-905, gnl\|bosTau2\|chr11 (33895236-33895565)
	566-905, gnl\|Hg17\|chr2 (86165537-86165155)
	566-905, gnl\|Mm7\|chr6 (71996971-71997271)

	jca (0.22792)
	fbs (0.175346)
	csp (0.161186)
	hyp (0.142837)
	cov (0.132153)
	eru (0.120048)