Non-Coding RNA Search

Ss1.1-rfbs3912b_d23.5

Sequence:


               
               GTTGAGTCTTTACATTTAGAATTTGAAAGGAAAAGAAGAACATTTCTCATGTGCTTTGTA
GCTTAAAAAAAAAACAAAAAACAAAAGGAAAAAGGAAAACTCACCATCTCATCCATCTTT
CTTTTCTTTTTTGAAGAAACGTACGTACACTCATGCATCCGTGCCCTCCCCATCCCACCT
GCAGAGGTGCCGCCTGTCCGCACGGGGGCGCTGGTCCCCACAGCGGCCCAGGCCCCACTT
TCCAGATGCGGCCTCACCGCCCACAGCCCTCCCCCAACCCAGACCCACAGCCCTGAGCCC
CTCCAACCACACGCTCGCTCCAGGTTTGTATAGAAAAAGCACAGCTCTCACTGGCCAGTA
GCTGCCCCCAAAAGAATACAGAACATATATATAAATAGAGCCCTATAGAAAACAGTTTCC
CCCCAACCCCTTTCTACAGTTACTTTCTCATTTTTTTCCAGTTGTTTTAGTTTTTCTTTG
TCCTGATAAGAACTATGTATTACATACCAGGTCAGCTTTCAGTCTTTGGGAACCGGGTTG
TGGTTTACCCCCTGCTGACATTTCGCTTCTCCGTCTCTCAGATGGATGTGTGCGCACCCC
TCCACCTTTTCCTTTGTTTCAGTGACCTGTGTTCGCTCTTTCTCATGTGGGGATGTTTGT
GCTGCAGATACAAACAAAAATTTTTAAATACCACAAGATGGGAAAAAAAAAAAAAAAAAG
ATGGAATGTAGTGTTTACATGAAAGCCACAGTTCTCATGATCAGCCCACTGTCATTTCTA
CTTTGACTAGTATCAAACCCCAAACCTCTTCACGGTTTCACTTTTAAGACTTAATATTTG
CTGAAGACCAGTCACAGCCATTTCAGATAAAGAGGCAAAAAGACAAAACACAAAAAATTT
AAAATGCAGAAAAATAAAAAAACTTGGAAAAAAAAAAAGGAAAAAAAAAAAAAAAAAGAA
GCCCACGGGTCTTTCTAAGCCTTTCTATTCCCAATCGGTGAGGTTTCTGTGATATCTTAC
ACACTGCCAGTCTACTTCTCTGACTAATGGAAAATTCATGTGTAGCTCAATAAAGAGAAT
GTTGGTCTGTAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTTGAGTCTTTACATTTAGAATTTGAAAGGAAAAGAAGAACATTTCTCATGTGCTTTGTA
GCTTAAAAAAAAAACAAAAAACAAAAGGAAAAAGGAAAACTCACCATCTCATCCATCTTT
CTTTTCTTTTTTGAAGAAACGTACGTACACTCATGCATCCGTGCCCTCCCCATCCCACCT
GCAGAGGTGCCGCCTGTCCGCACGGGGGCGCTGGTCCCCACAGCGGCCCAGGCCCCACTT
TCCAGATGCGGCCTCACCGCCCACAGCCCTCCCCCAACCCAGACCCACAGCCCTGAGCCC
CTCCAACCACACGCTCGCTCCAGGTTTGTATAGAAAAAGCACAGCTCTCACTGGCCAGTA
GCTGCCCCCAAAAGAATACAGAACATATATATAAATAGAGCCCTATAGAAAACAGTTTCC
CCCCAACCCCTTTCTACAGTTACTTTCTCATTTTTTTCCAGTTGTTTTAGTTTTTCTTTG
TCCTGATAAGAACTATGTATTACATACCAGGTCAGCTTTCAGTCTTTGGGAACCGGGTTG
TGGTTTACCCCCTGCTGACATTTCGCTTCTCCGTCTCTCAGATGGATGTGTGCGCACCCC
TCCACCTTTTCCTTTGTTTCAGTGACCTGTGTTCGCTCTTTCTCATGTGGGGATGTTTGT
GCTGCAGATACAAACAAAAATTTTTAAATACCACAAGATGGGAAAAAAAAAAAAAAAAAG
ATGGAATGTAGTGTTTACATGAAAGCCACAGTTCTCATGATCAGCCCACTGTCATTTCTA
CTTTGACTAGTATCAAACCCCAAACCTCTTCACGGTTTCACTTTTAAGACTTAATATTTG
CTGAAGACCAGTCACAGCCATTTCAGATAAAGAGGCAAAAAGACAAAACACAAAAAATTT
AAAATGCAGAAAAATAAAAAAACTTGGAAAAAAAAAAAGGAAAAAAAAAAAAAAAAAGAA
GCCCACGGGTCTTTCTAAGCCTTTCTATTCCCAATCGGTGAGGTTTCTGTGATATCTTAC
ACACTGCCAGTCTACTTCTCTGACTAATGGAAAATTCATGTGTAGCTCAATAAAGAGAAT
GTTGGTCTGTAAAAAAAAAAAAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               2-588, gnl|bosTau2|chr18 (25326943-25327525)
               

               
               2-588, gnl|Hg17|chr16 (54947681-54948340)
               

               
               2-588, gnl|Mm7|chr8 (92557240-92557916)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-588, gnl|bosTau2|chr18 (25326943-25327525)
               

               
               2-588, gnl|Hg17|chr16 (54947681-54948340)
               

               
               2-588, gnl|Mm7|chr8 (92557240-92557916)

Expressed library(ies): 14 entry(ies)

More info

Expressed library(ies): 14 entry(ies)

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               cbe (0.717703)
               

               
               fcc (0.593354)
               

               
               fbs (0.526039)
               

               
               nlu (0.383362)
               

               
               spc (0.340097)
               

               
               fco (0.314416)
               

               
               ecc (0.23007)
               

               
               ece (0.229305)
               

               
               cmu (0.186393)
               

               
               sag (0.182715)
               

               
               eye (0.170503)
               

               
               cut (0.169924)
               

               
               ebs (0.118301)
               

               
               med (0.116252)

Expressed library(ies): 14 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbe (0.717703)
               

               
               fcc (0.593354)
               

               
               fbs (0.526039)
               

               
               nlu (0.383362)
               

               
               spc (0.340097)
               

               
               fco (0.314416)
               

               
               ecc (0.23007)
               

               
               ece (0.229305)
               

               
               cmu (0.186393)
               

               
               sag (0.182715)
               

               
               eye (0.170503)
               

               
               cut (0.169924)
               

               
               ebs (0.118301)
               

               
               med (0.116252)

	2-588, gnl\|bosTau2\|chr18 (25326943-25327525)
	2-588, gnl\|Hg17\|chr16 (54947681-54948340)
	2-588, gnl\|Mm7\|chr8 (92557240-92557916)

	cbe (0.717703)
	fcc (0.593354)
	fbs (0.526039)
	nlu (0.383362)
	spc (0.340097)
	fco (0.314416)
	ecc (0.23007)
	ece (0.229305)
	cmu (0.186393)
	sag (0.182715)
	eye (0.170503)
	cut (0.169924)
	ebs (0.118301)
	med (0.116252)