Non-Coding RNA Search

Ss1.1-rfbs3913b_c18.5

Sequence:


               
               GGAAAGCGGAGGGGAAGGTCTCTCGGCCCCTTTCATCCTGAGATTGCACACAAGAGCACG
GGTGCCCAGCACAGCCAGCCTGATGTTGCTGACAGGACCCCCACACAGCTCGTCCTTCTC
ACTGATATCGGCAGCTCAGCTCCTGGACCCAGCATCCCTGGAGTGGGTTTCTGCAGTACA
AGAGCCTTTCTGGGCTCTCTCTGTCTTTCCCTGGTCCCTGATCTTACTGCCTGCCCACCC
ACTTGGTGGGGCCACCAACTACTTACAAGAAGGAGGAGCCGAGAAAGCCTGAACAGCCAC
TGTTGACTTCCCCGGCTCCTTGCAACTCCGATGCCCCTGGCAGCCCCCCCACCACATTCT
CGGCCCGTTCTGTGCACGTAGTTCTGAACTGATGGACGAGCGGACTGCTGCCTCCAGCAA
CCACCCAGGCAAAAGCCAGGGAGCCTATTAACCGTGCCATCTTGCAAACTACATTTAAAA
ACAAAAGATCATTGCTTTGTATTGTAGTAACCAATATGCTCAGTATATGTTGAATGTACA
TGAATATACTTTCCTATTTCTGTTCTTTGAAAATGTCAAAGTATTTTTTCCTTTCTCATT
TATGTTGAACTAAAAAAGGATTAAAAAAGAAAAATCTCCAGACCCAAGTTGCAGTAAGAC
CTTTAGTCCTTTTTTGTAGGCACTTACAACTTAGTAACTTGGTTGGACATAGGGGATTGT
GAAAATAAACACTTGATTATGATCTTAAAAAAAAAAAAAAAAAAACTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGAAAGCGGAGGGGAAGGTCTCTCGGCCCCTTTCATCCTGAGATTGCACACAAGAGCACG
GGTGCCCAGCACAGCCAGCCTGATGTTGCTGACAGGACCCCCACACAGCTCGTCCTTCTC
ACTGATATCGGCAGCTCAGCTCCTGGACCCAGCATCCCTGGAGTGGGTTTCTGCAGTACA
AGAGCCTTTCTGGGCTCTCTCTGTCTTTCCCTGGTCCCTGATCTTACTGCCTGCCCACCC
ACTTGGTGGGGCCACCAACTACTTACAAGAAGGAGGAGCCGAGAAAGCCTGAACAGCCAC
TGTTGACTTCCCCGGCTCCTTGCAACTCCGATGCCCCTGGCAGCCCCCCCACCACATTCT
CGGCCCGTTCTGTGCACGTAGTTCTGAACTGATGGACGAGCGGACTGCTGCCTCCAGCAA
CCACCCAGGCAAAAGCCAGGGAGCCTATTAACCGTGCCATCTTGCAAACTACATTTAAAA
ACAAAAGATCATTGCTTTGTATTGTAGTAACCAATATGCTCAGTATATGTTGAATGTACA
TGAATATACTTTCCTATTTCTGTTCTTTGAAAATGTCAAAGTATTTTTTCCTTTCTCATT
TATGTTGAACTAAAAAAGGATTAAAAAAGAAAAATCTCCAGACCCAAGTTGCAGTAAGAC
CTTTAGTCCTTTTTTGTAGGCACTTACAACTTAGTAACTTGGTTGGACATAGGGGATTGT
GAAAATAAACACTTGATTATGATCTTAAAAAAAAAAAAAAAAAAACTC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               134-244, - strand, RNAz p=0.962167

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               134-244, - strand, RNAz p=0.962167

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               17-747, gnl|bosTau2|chr15 (13181028-13181740)
               

               
               17-747, gnl|Hg17|chr11 (116219960-116219218)
               

               
               17-747, gnl|Mm7|chr9 (46181595-46182311)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               17-747, gnl|bosTau2|chr15 (13181028-13181740)
               

               
               17-747, gnl|Hg17|chr11 (116219960-116219218)
               

               
               17-747, gnl|Mm7|chr9 (46181595-46182311)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               fbs (0.175346)
               

               
               bfe (0.149858)
               

               
               bla (0.124347)
               

               
               cly (0.120642)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fbs (0.175346)
               

               
               bfe (0.149858)
               

               
               bla (0.124347)
               

               
               cly (0.120642)

	17-747, gnl\|bosTau2\|chr15 (13181028-13181740)
	17-747, gnl\|Hg17\|chr11 (116219960-116219218)
	17-747, gnl\|Mm7\|chr9 (46181595-46182311)