Non-Coding RNA Search

Ss1.1-rfbs3913b_e18.5

Sequence:


               
               AGCGCAGACGCCCCTCCTGTCCCCTTCCGTCCCACACCCGCCCCAAAGACACACCAACCT
CCATTTCTTTTATAGACAAGCCCTCACTGTACAGAACAGCCCTCCTGGTTTACTTGGGGT
CCCCTCTCCCCCAAGCCCCTTCTTCTGTTGGTTTAGCACAAACACCCCCTCCGGCACCTC
CAGACCTAACCCCCCGTCAATGTAATTGTTTTATATATATTTAATCTTATTCAATGGAAA
CCATGCTTTTGTCGTTTTATACTTTGCTAGGTAGACTTTATTACCCACCCCCGACTATGC
CCTCATTTTTTTAAAAAAGGAAAAAAAAAAAGACATTGGGTTTCAGTCTTAATCCATTTT
CCGTGCCAGGTTTGATTTCGTGTGTGCGTGTGAGTGTGTTCCGTTTCGTGTATTGTTTTT
TTTGTTGTTGTTGTTTTCTGTTGTTCGGTTTTACCTGCTCCCCTCCAGTCCCATACTTTA
CAGCACTCTGGTGCAGGAAGAAGCAGAAGCAAAAAAGAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGCGCAGACGCCCCTCCTGTCCCCTTCCGTCCCACACCCGCCCCAAAGACACACCAACCT
CCATTTCTTTTATAGACAAGCCCTCACTGTACAGAACAGCCCTCCTGGTTTACTTGGGGT
CCCCTCTCCCCCAAGCCCCTTCTTCTGTTGGTTTAGCACAAACACCCCCTCCGGCACCTC
CAGACCTAACCCCCCGTCAATGTAATTGTTTTATATATATTTAATCTTATTCAATGGAAA
CCATGCTTTTGTCGTTTTATACTTTGCTAGGTAGACTTTATTACCCACCCCCGACTATGC
CCTCATTTTTTTAAAAAAGGAAAAAAAAAAAGACATTGGGTTTCAGTCTTAATCCATTTT
CCGTGCCAGGTTTGATTTCGTGTGTGCGTGTGAGTGTGTTCCGTTTCGTGTATTGTTTTT
TTTGTTGTTGTTGTTTTCTGTTGTTCGGTTTTACCTGCTCCCCTCCAGTCCCATACTTTA
CAGCACTCTGGTGCAGGAAGAAGCAGAAGCAAAAAAGAAAAAAAAAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               3-527, gnl|bosTau2|chr18 (7126075-7125554)
               

               
               3-527, gnl|Hg17|chr16 (80302160-80302714)
               

               
               3-527, gnl|Mm7|chr8 (116074181-116074796)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-527, gnl|bosTau2|chr18 (7126075-7125554)
               

               
               3-527, gnl|Hg17|chr16 (80302160-80302714)
               

               
               3-527, gnl|Mm7|chr8 (116074181-116074796)

Expressed library(ies): 11 entry(ies)

More info

Expressed library(ies): 11 entry(ies)

Help | Less info


               
               fcc (0.39557)
               

               
               fbs (0.350693)
               

               
               cte (0.29274)
               

               
               cbe (0.239234)
               

               
               eye (0.170503)
               

               
               fhi (0.169578)
               

               
               csk (0.140746)
               

               
               lyg (0.133103)
               

               
               cov (0.132153)
               

               
               ebs (0.118301)
               

               
               jej (0.0989218)

Expressed library(ies): 11 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fcc (0.39557)
               

               
               fbs (0.350693)
               

               
               cte (0.29274)
               

               
               cbe (0.239234)
               

               
               eye (0.170503)
               

               
               fhi (0.169578)
               

               
               csk (0.140746)
               

               
               lyg (0.133103)
               

               
               cov (0.132153)
               

               
               ebs (0.118301)
               

               
               jej (0.0989218)

	3-527, gnl\|bosTau2\|chr18 (7126075-7125554)
	3-527, gnl\|Hg17\|chr16 (80302160-80302714)
	3-527, gnl\|Mm7\|chr8 (116074181-116074796)

	fcc (0.39557)
	fbs (0.350693)
	cte (0.29274)
	cbe (0.239234)
	eye (0.170503)
	fhi (0.169578)
	csk (0.140746)
	lyg (0.133103)
	cov (0.132153)
	ebs (0.118301)
	jej (0.0989218)