Ss1.1-rfbs3913b_o23.5
|
AGAGACTACCTGCCTGTTGGGGGTGGCTTTGCGGCTTTAAAAATGCCCCCCAGCCCAGGA
GACAACAGGTGCCCTGCAAATCTGGGAGTTCTAGTCCTCACCGAACCAGCTGCCAACCAG
AGCGGTCTGTGTTTCCGAAGTGCCCACAGATCTGACTGGGGCTCCAACCACCTGGCAGGC
AGAACCGACTCAAACTTGACCTTGGTGTCAGCAAAGCGGGCCTAAGGGCAGAGCCCACCT
GCTTCACCGCACTTCCAGGTTGTAGCACGAGCACAATTAAAACTCAAGCAGATCCCAGAT
CCCTCTTCCCTTTAGTGATATTAACTCCAAAGAGATGCCACTGCCTGACTGCTTAGTCTT
CAGTTTGCCAGAGAAGCCTCAATTTTCTAAAAAATTCAAAACGAATCCTCTCCCATAAAG
GCATAGTCCATTAGCTGGGTTTGGTGATAGCAGGTGTGACCCGAAAGGCTGAAGTCTTTT
AGATTTTGTACAGAAAGTTTCTCAAACTTGCCACCATGCCAGTAGCCACTGGTATCCGTG
GCAACGTGATGTCCACGTTGAGCAAATTGTTGAAAATCATGCGTGGTCTTTGATATTTTT
ATTTCGATTTGGATGACGAAAACAGAGGAACTCTGAGCGTGTCACGTTGTTAGAAAGTCC
CTTTAAAGCACAGTAGGGCTGAACAGGCATACGTAGTTAAAAGCCGGCACCAGGCCACAC
AAAAATAAACATTTAATTTGCTGAGAAGTGTGTATTCAAGTTATTCAGTACCCCAGAGAA
AGCTGACAGTCTGTCCTTTGTAAAACTGCCGTTGCCTGTTTTTTTCCTTTGGTTTTGTTT
TTGTTCAGATTTTTTTTTTTTTTT
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
AGAGACTACCTGCCTGTTGGGGGTGGCTTTGCGGCTTTAAAAATGCCCCCCAGCCCAGGA
GACAACAGGTGCCCTGCAAATCTGGGAGTTCTAGTCCTCACCGAACCAGCTGCCAACCAG
AGCGGTCTGTGTTTCCGAAGTGCCCACAGATCTGACTGGGGCTCCAACCACCTGGCAGGC
AGAACCGACTCAAACTTGACCTTGGTGTCAGCAAAGCGGGCCTAAGGGCAGAGCCCACCT
GCTTCACCGCACTTCCAGGTTGTAGCACGAGCACAATTAAAACTCAAGCAGATCCCAGAT
CCCTCTTCCCTTTAGTGATATTAACTCCAAAGAGATGCCACTGCCTGACTGCTTAGTCTT
CAGTTTGCCAGAGAAGCCTCAATTTTCTAAAAAATTCAAAACGAATCCTCTCCCATAAAG
GCATAGTCCATTAGCTGGGTTTGGTGATAGCAGGTGTGACCCGAAAGGCTGAAGTCTTTT
AGATTTTGTACAGAAAGTTTCTCAAACTTGCCACCATGCCAGTAGCCACTGGTATCCGTG
GCAACGTGATGTCCACGTTGAGCAAATTGTTGAAAATCATGCGTGGTCTTTGATATTTTT
ATTTCGATTTGGATGACGAAAACAGAGGAACTCTGAGCGTGTCACGTTGTTAGAAAGTCC
CTTTAAAGCACAGTAGGGCTGAACAGGCATACGTAGTTAAAAGCCGGCACCAGGCCACAC
AAAAATAAACATTTAATTTGCTGAGAAGTGTGTATTCAAGTTATTCAGTACCCCAGAGAA
AGCTGACAGTCTGTCCTTTGTAAAACTGCCGTTGCCTGTTTTTTTCCTTTGGTTTTGTTT
TTGTTCAGATTTTTTTTTTTTTTT
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
16-212, gnl|bosTau2|chr4 (36750505-36750307) |
|
16-212, gnl|Hg17|chr7 (29974247-29974443) |
| |
|
216-581, gnl|bosTau2|chr4 (36750274-36749914) |
|
216-581, gnl|canFam2|chr14 (45883416-45883877) |
|
216-581, gnl|dasNov1|scaffold_1444 (83057-83484) |
|
216-581, gnl|hg17|chr7 (29974385-29974794) |
|
216-581, gnl|Hg17|chr7 (29974473-29974823) |
|
216-581, gnl|loxAfr1|scaffold_6719 (52798-53234) |
|
216-581, gnl|mm7|chr6 (54666209-54666536) |
|
216-581, gnl|Mm7|chr6 (54666230-54666531) |
|
216-581, gnl|panTro1|chr6 (31093881-31094291) |
|
216-581, gnl|rheMac2|chr3 (96043251-96042842) |
|
216-581, gnl|rn3|chr4 (83392300-83392612) |
| |
|
607-864, gnl|bosTau2|chr4 (36749852-36749601) |
|
607-864, gnl|Hg17|chr7 (29974893-29975140) |
|
607-864, gnl|Mm7|chr6 (54666532-54666753) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
16-212, gnl|bosTau2|chr4 (36750505-36750307) |
|
16-212, gnl|Hg17|chr7 (29974247-29974443) |
| |
|
216-581, gnl|bosTau2|chr4 (36750274-36749914) |
|
216-581, gnl|canFam2|chr14 (45883416-45883877) |
|
216-581, gnl|dasNov1|scaffold_1444 (83057-83484) |
|
216-581, gnl|hg17|chr7 (29974385-29974794) |
|
216-581, gnl|Hg17|chr7 (29974473-29974823) |
|
216-581, gnl|loxAfr1|scaffold_6719 (52798-53234) |
|
216-581, gnl|mm7|chr6 (54666209-54666536) |
|
216-581, gnl|Mm7|chr6 (54666230-54666531) |
|
216-581, gnl|panTro1|chr6 (31093881-31094291) |
|
216-581, gnl|rheMac2|chr3 (96043251-96042842) |
|
216-581, gnl|rn3|chr4 (83392300-83392612) |
| |
|
607-864, gnl|bosTau2|chr4 (36749852-36749601) |
|
607-864, gnl|Hg17|chr7 (29974893-29975140) |
|
607-864, gnl|Mm7|chr6 (54666532-54666753) |
|
fbs (0.526039) |
|
pro (0.512033) |
|
hyp (0.285673) |
|
fcc (0.197785) |
|
fhi (0.169578) |
|
ecc (0.115035) |
|
fbs (0.526039) |
|
pro (0.512033) |
|
hyp (0.285673) |
|
fcc (0.197785) |
|
fhi (0.169578) |
|
ecc (0.115035) |
