Ss1.1-rfbs3919b_i13.5
|
CCGGCCGGCCGTCCCCGGCCCCAGCGCCGCTGACCCTGTCCGCCGCGGGCGGGGACGCGG
GCGGAGGAGGTGCCGCCGCGGAGCCCCCGGACGCGACCATGTCGGAGGTGCTGCCCTACG
GCGACGAGAAGCTGAGTCCCTACGGCGACGGCGGCGACGTGGGCCAGATCTTCTCCTGCC
GCCTGCAGGACACCAATAACTTCTTCGGCGCGGGGCAGAACAAGCGGCCGCCCAAGCTGG
GCCAGATCGGCCGGAGCAAGAGGGTTGTTATTGAAGATGATAGGATTGATGACGTGCTGA
AAAATATGACAGACAAGGCACCTCCCGGTGTCTAACTCCCCCAAAGACAATGAGTTAAGG
GAGAGAATAAGAATGGGAACGGCGATAACAGTTATTGGCAAAAAGAGCAGGAAAAGAGAA
AGCACTTTGAAATTTATTACTAGCTTGCTACCCACGATGAAGTCAACAACCTGTGTCTCG
TGTCAGGCCGGGAGACAGATGAGGCGTGAGAAAGAAGCAGAAGGCTCTGGGCTCCTTTGC
AAAATAAAAGTTAAAAAAAATTTTTAAAAAATTGAAAAAAATCACTATATACCCACATGT
AAAGAAATAAAAAAGTCTCAGTTGCAGCTGTTTGTCAAAATTAATATCCATTTCTTTTTA
TATACAGTGAATATTGCGCAATCATAGATCTGGATTTTGAACCACTTAAATAATAAAGCA
GCAACACCGGGTGTTTTGAGGTGTTGGCATTCTTTGCTGATTTGGCTGTTCCCCATGTTT
ACATTATTTAATCTTGCAAAAATGATTCTGTGCACTTGGATGTGAAATGCTGTCCAGTTT
TATTTTTTTTATGTTGTTATCCTGGGATGTACAAAAAAAAATCAGAAAATGATCTCTAGA
GATATTCCATTTTATTCTGATCAGCTTTTGAAGTTATCAAGAATGTGTTTCAAACAAGAA
GAGAACTTTTCTAAGGAATCATACATAGGATCCTTGCTTTATTTTAAAATGAATTGTAAA
GCTTGTGTTTCTTTGTTGCTGCAAGCTATTTGCCCAAGTTAATGCAAACGAACACATTTT
ATATGTCAGGAAAAAAAAAAAAGAAGAAAAAAAAATGCTTGAGCTTTTTCTAACCTCTCT
GCAGTCTGTTGTGTGAGCAGCCTGTTTTTTCCCTCTAATATTGTGTCAGTTTATTCTCTT
TAATGGACTGTAAAAAAAATGTAATCACAAGAGTGCCAAATATCTTGAAATGCCAAAAGG
CATTTTGGTTTCTTTTCTTTTCCCTGTGCTCTGAGTCCATGTAAAGGAATGCTTGGAGTG
TCTTTTTCTGTTATTTATAGGGGTTCTCTTAAGGCACACCAGCTGCCTGTTTGCATGGTA
TTTGCAAAAATGCCTCTTGCGTGAGGAAATCTTTTACCCTTTTTTGTTTGCAACTTTGGA
CCTCAAAAGGTTTCTTCCTTTCCCGACCCTGTTCCCTCTTTTCTTAATTCGATATTCTGT
ATGTTGCACCTTTAACCAGCACACAGGGCTACTTCTCCAATGTACAATAAAAGAACTGTT
CCTGTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
CCGGCCGGCCGTCCCCGGCCCCAGCGCCGCTGACCCTGTCCGCCGCGGGCGGGGACGCGG
GCGGAGGAGGTGCCGCCGCGGAGCCCCCGGACGCGACCATGTCGGAGGTGCTGCCCTACG
GCGACGAGAAGCTGAGTCCCTACGGCGACGGCGGCGACGTGGGCCAGATCTTCTCCTGCC
GCCTGCAGGACACCAATAACTTCTTCGGCGCGGGGCAGAACAAGCGGCCGCCCAAGCTGG
GCCAGATCGGCCGGAGCAAGAGGGTTGTTATTGAAGATGATAGGATTGATGACGTGCTGA
AAAATATGACAGACAAGGCACCTCCCGGTGTCTAACTCCCCCAAAGACAATGAGTTAAGG
GAGAGAATAAGAATGGGAACGGCGATAACAGTTATTGGCAAAAAGAGCAGGAAAAGAGAA
AGCACTTTGAAATTTATTACTAGCTTGCTACCCACGATGAAGTCAACAACCTGTGTCTCG
TGTCAGGCCGGGAGACAGATGAGGCGTGAGAAAGAAGCAGAAGGCTCTGGGCTCCTTTGC
AAAATAAAAGTTAAAAAAAATTTTTAAAAAATTGAAAAAAATCACTATATACCCACATGT
AAAGAAATAAAAAAGTCTCAGTTGCAGCTGTTTGTCAAAATTAATATCCATTTCTTTTTA
TATACAGTGAATATTGCGCAATCATAGATCTGGATTTTGAACCACTTAAATAATAAAGCA
GCAACACCGGGTGTTTTGAGGTGTTGGCATTCTTTGCTGATTTGGCTGTTCCCCATGTTT
ACATTATTTAATCTTGCAAAAATGATTCTGTGCACTTGGATGTGAAATGCTGTCCAGTTT
TATTTTTTTTATGTTGTTATCCTGGGATGTACAAAAAAAAATCAGAAAATGATCTCTAGA
GATATTCCATTTTATTCTGATCAGCTTTTGAAGTTATCAAGAATGTGTTTCAAACAAGAA
GAGAACTTTTCTAAGGAATCATACATAGGATCCTTGCTTTATTTTAAAATGAATTGTAAA
GCTTGTGTTTCTTTGTTGCTGCAAGCTATTTGCCCAAGTTAATGCAAACGAACACATTTT
ATATGTCAGGAAAAAAAAAAAAGAAGAAAAAAAAATGCTTGAGCTTTTTCTAACCTCTCT
GCAGTCTGTTGTGTGAGCAGCCTGTTTTTTCCCTCTAATATTGTGTCAGTTTATTCTCTT
TAATGGACTGTAAAAAAAATGTAATCACAAGAGTGCCAAATATCTTGAAATGCCAAAAGG
CATTTTGGTTTCTTTTCTTTTCCCTGTGCTCTGAGTCCATGTAAAGGAATGCTTGGAGTG
TCTTTTTCTGTTATTTATAGGGGTTCTCTTAAGGCACACCAGCTGCCTGTTTGCATGGTA
TTTGCAAAAATGCCTCTTGCGTGAGGAAATCTTTTACCCTTTTTTGTTTGCAACTTTGGA
CCTCAAAAGGTTTCTTCCTTTCCCGACCCTGTTCCCTCTTTTCTTAATTCGATATTCTGT
ATGTTGCACCTTTAACCAGCACACAGGGCTACTTCTCCAATGTACAATAAAAGAACTGTT
CCTGTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
|
|
gi|30959106|gb|AAO49802.1| |
Protein identifier
|
gi|30959106|gb|AAO49802.1| |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
86-262, gnl|bosTau2|chr1 (51211106-51211284) |
|
86-262, gnl|canFam2|chr34 (20158454-20158665) |
|
86-262, gnl|danRer3|chr2 (40096000-40095826) |
|
86-262, gnl|dasNov1|scaffold_55118 (3723-3506) |
|
86-262, gnl|fr1|chrUn (136019914-136020079) |
|
86-262, gnl|hg17|chr3 (185461585-185461799) |
|
86-262, gnl|Hg17|chr3 (185461809-185461609) |
|
86-262, gnl|loxAfr1|scaffold_40446 (12652-12441) |
|
86-262, gnl|mm7|chr16 (20171025-20171236) |
|
86-262, gnl|Mm7|chr16 (20171238-20171049) |
|
86-262, gnl|monDom2|scaffold_180 (13824-14032) |
|
86-262, gnl|panTro1|chr2 (189415332-189415546) |
|
86-262, gnl|rheMac2|chr2 (102409264-102409050) |
|
86-262, gnl|rn3|chr11 (82577197-82576986) |
|
86-262, gnl|tetNig1|chr15 (5091292-5091106) |
|
86-262, gnl|xenTro1|scaffold_244 (247130-247300) |
| |
|
264-1566, gnl|bosTau2|chr17 (41868211-41866892) |
|
264-1566, gnl|Hg17|chr1 (20555519-20554195) |
|
264-1566, gnl|Mm7|chr4 (137835158-137836581) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
86-262, gnl|bosTau2|chr1 (51211106-51211284) |
|
86-262, gnl|canFam2|chr34 (20158454-20158665) |
|
86-262, gnl|danRer3|chr2 (40096000-40095826) |
|
86-262, gnl|dasNov1|scaffold_55118 (3723-3506) |
|
86-262, gnl|fr1|chrUn (136019914-136020079) |
|
86-262, gnl|hg17|chr3 (185461585-185461799) |
|
86-262, gnl|Hg17|chr3 (185461809-185461609) |
|
86-262, gnl|loxAfr1|scaffold_40446 (12652-12441) |
|
86-262, gnl|mm7|chr16 (20171025-20171236) |
|
86-262, gnl|Mm7|chr16 (20171238-20171049) |
|
86-262, gnl|monDom2|scaffold_180 (13824-14032) |
|
86-262, gnl|panTro1|chr2 (189415332-189415546) |
|
86-262, gnl|rheMac2|chr2 (102409264-102409050) |
|
86-262, gnl|rn3|chr11 (82577197-82576986) |
|
86-262, gnl|tetNig1|chr15 (5091292-5091106) |
|
86-262, gnl|xenTro1|scaffold_244 (247130-247300) |
| |
|
264-1566, gnl|bosTau2|chr17 (41868211-41866892) |
|
264-1566, gnl|Hg17|chr1 (20555519-20554195) |
|
264-1566, gnl|Mm7|chr4 (137835158-137836581) |
|
fco (2.82974) |
|
fcc (1.78006) |
|
ebs (0.709807) |
|
fbs (0.701385) |
|
ece (0.687916) |
|
fce (0.543183) |
|
pla (0.534688) |
|
spc (0.453463) |
|
ski (0.440205) |
|
ret (0.3862) |
|
pgl (0.35545) |
|
cut (0.339847) |
|
fhi (0.339155) |
|
ste (0.270416) |
|
ese (0.253004) |
|
eru (0.240096) |
|
cbe (0.239234) |
|
jej (0.197844) |
|
aor (0.195274) |
|
cmu (0.186393) |
|
sto (0.179824) |
|
rec (0.17307) |
|
lun (0.150489) |
|
fat (0.147427) |
|
liv (0.146284) |
|
hyp (0.142837) |
|
bla (0.124347) |
|
cly (0.120642) |
|
ecc (0.115035) |
|
jca (0.11396) |
|
fco (2.82974) |
|
fcc (1.78006) |
|
ebs (0.709807) |
|
fbs (0.701385) |
|
ece (0.687916) |
|
fce (0.543183) |
|
pla (0.534688) |
|
spc (0.453463) |
|
ski (0.440205) |
|
ret (0.3862) |
|
pgl (0.35545) |
|
cut (0.339847) |
|
fhi (0.339155) |
|
ste (0.270416) |
|
ese (0.253004) |
|
eru (0.240096) |
|
cbe (0.239234) |
|
jej (0.197844) |
|
aor (0.195274) |
|
cmu (0.186393) |
|
sto (0.179824) |
|
rec (0.17307) |
|
lun (0.150489) |
|
fat (0.147427) |
|
liv (0.146284) |
|
hyp (0.142837) |
|
bla (0.124347) |
|
cly (0.120642) |
|
ecc (0.115035) |
|
jca (0.11396) |
