Non-Coding RNA Search

Ss1.1-rfbs3919b_j17.5

Sequence:


               
               GTTATCACTGTCTGGAACACTCTAAATTGTAGATAATCTGATGACTTGCCCACCCACTTC
TAGTATGCTCAAATGTCACCTCCCTCGAGAAGCATTCCCTAACCACCATATCTAAAATAA
CCCCATTCACCAGCACTTTCATCATCCCCTTATCCTATTTATGGCTTATGTTTTTCTGCA
GAGCACTGATCACCACCTGATATATTTATTTATTTATGGTGATTAGTGTTTGTCTGTCCC
CAATAGACTGTAAGCTCCACAAAGCAGGACTCTTGTTTTTGTTCTTTGCTGTATCCCCAG
TGCCGAGAACAGTGCATAGTAATATTGAGTAGATACTCAATAAATATTTGTGGAATAAAC
TGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTTATCACTGTCTGGAACACTCTAAATTGTAGATAATCTGATGACTTGCCCACCCACTTC
TAGTATGCTCAAATGTCACCTCCCTCGAGAAGCATTCCCTAACCACCATATCTAAAATAA
CCCCATTCACCAGCACTTTCATCATCCCCTTATCCTATTTATGGCTTATGTTTTTCTGCA
GAGCACTGATCACCACCTGATATATTTATTTATTTATGGTGATTAGTGTTTGTCTGTCCC
CAATAGACTGTAAGCTCCACAAAGCAGGACTCTTGTTTTTGTTCTTTGCTGTATCCCCAG
TGCCGAGAACAGTGCATAGTAATATTGAGTAGATACTCAATAAATATTTGTGGAATAAAC
TGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               150-266, - strand, RNAz p=0.983776

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               150-266, - strand, RNAz p=0.983776

Aligned organism(s): 12 entry(ies)

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Aligned organism(s): 12 entry(ies)

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               31-363, gnl|bosTau2|chr25 (13996584-13996254)
               

               
               31-363, gnl|canFam2|chrX (44890743-44891110)
               

               
               31-363, gnl|dasNov1|scaffold_87833 (5544-5188)
               

               
               31-363, gnl|echTel1|scaffold_123356 (4-356)
               

               
               31-363, gnl|hg17|chrX (53039277-53039643)
               

               
               31-363, gnl|Hg17|chrX (53039317-53039640)
               

               
               31-363, gnl|mm7|chrX (147053856-147053503)
               

               
               31-363, gnl|Mm7|chrX (147053814-147053500)
               

               
               31-363, gnl|oryCun1|scaffold_171013 (7543-7921)
               

               
               31-363, gnl|panTro1|chrX (54280751-54281117)
               

               
               31-363, gnl|rheMac2|chrX (51448986-51449352)
               

               
               31-363, gnl|rn3|chrX (41850452-41850113)

Aligned organism(s): 12 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               31-363, gnl|bosTau2|chr25 (13996584-13996254)
               

               
               31-363, gnl|canFam2|chrX (44890743-44891110)
               

               
               31-363, gnl|dasNov1|scaffold_87833 (5544-5188)
               

               
               31-363, gnl|echTel1|scaffold_123356 (4-356)
               

               
               31-363, gnl|hg17|chrX (53039277-53039643)
               

               
               31-363, gnl|Hg17|chrX (53039317-53039640)
               

               
               31-363, gnl|mm7|chrX (147053856-147053503)
               

               
               31-363, gnl|Mm7|chrX (147053814-147053500)
               

               
               31-363, gnl|oryCun1|scaffold_171013 (7543-7921)
               

               
               31-363, gnl|panTro1|chrX (54280751-54281117)
               

               
               31-363, gnl|rheMac2|chrX (51448986-51449352)
               

               
               31-363, gnl|rn3|chrX (41850452-41850113)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               fcc (0.197785)
               

               
               fbs (0.175346)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fcc (0.197785)
               

               
               fbs (0.175346)

	31-363, gnl\|bosTau2\|chr25 (13996584-13996254)
	31-363, gnl\|canFam2\|chrX (44890743-44891110)
	31-363, gnl\|dasNov1\|scaffold_87833 (5544-5188)
	31-363, gnl\|echTel1\|scaffold_123356 (4-356)
	31-363, gnl\|hg17\|chrX (53039277-53039643)
	31-363, gnl\|Hg17\|chrX (53039317-53039640)
	31-363, gnl\|mm7\|chrX (147053856-147053503)
	31-363, gnl\|Mm7\|chrX (147053814-147053500)
	31-363, gnl\|oryCun1\|scaffold_171013 (7543-7921)
	31-363, gnl\|panTro1\|chrX (54280751-54281117)
	31-363, gnl\|rheMac2\|chrX (51448986-51449352)
	31-363, gnl\|rn3\|chrX (41850452-41850113)