Non-Coding RNA Search

Ss1.1-rfbs3919b_k8.5

Sequence:


               
               CATCACTGCAGCATCTAATGTGGACAAAGTACAAGAAAGCAGAAATTCAAAAAGCAGGTC
TAGGGAGCAACAAAGCTCCTAATTGTATTACCCACTACATGACATGTGGGCCAAGTGAGA
GAAAAGTGTCCTTCAGTTTCTCAGTGTGAAGCCTTTATTTCTGAAGTAACAAGACACCCA
ACTATAGGAAACATTTTAAAAACTCTTTAAGGAGACTTTAAATAATCCTTCGTGAATAGA
GCAGGCAAGAAATACAAACCTTCATTACTTCCTTGAATCAAGGAGCACTACTGGAGTCAA
CTGCCAAAATTTTTAGAAGGTTTTTTTGTGACTTACTATACATTGTACTGTTAAGATCTA
CTGAATAAAGGATATTCTCTCGCTAAGGACCAAGTGTTTTAAAGTTTCAAGAAGTACTCC
AAGAACAATCTACTTCTTTCATCATCTGTTCATGAATTTATCCATGTTTGCTTAATGCTT
CTGCTAAGTATTAGCCAAAATCTAGCCATTTATATTTAGTTGTGTAAACCTAAATTAAAT
GCTGTAGTATGTTGTGGAATGTACTATATATCAAGATACAGAGAACATTGTTTTGGCATG
TCAGAGCCTTATTTGGTTAGCAGACTGCATGTGTTGGTATTCTTTTCTTTTTTAAGCCAG
TTATCTTGATGCACTGCAAAAGAAATTCAGTTTATGAGATAACTCTGAAAAGTCTGAGAT
AGGAGAATTTACAGTGATATTAATCTTTCCATGTCCCCCACTAAGCAACACTAAGCAGTT
CACACATGGATCCAAGGTAATTAAAGTGTGTTTTTCTGAAATTTTTTTTCATAAGGTAGT
TTTTCTAGCAAATGACATTCCCAAGATAGAGCTGTTGTGTTTGAAATCATTTCCCTTCTT
TAGTATTGAGTTATATACGTGTTTGTTTTTTTAACTTGAGAGCTGACTGTTGCTTAAGAA
GTTTTCTTATGGCAAAAATAATGTAAATAATTTACTATGATCTGCATTTTGCCAGGAACT
CATTTATTATTAAGGTTACCACTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CATCACTGCAGCATCTAATGTGGACAAAGTACAAGAAAGCAGAAATTCAAAAAGCAGGTC
TAGGGAGCAACAAAGCTCCTAATTGTATTACCCACTACATGACATGTGGGCCAAGTGAGA
GAAAAGTGTCCTTCAGTTTCTCAGTGTGAAGCCTTTATTTCTGAAGTAACAAGACACCCA
ACTATAGGAAACATTTTAAAAACTCTTTAAGGAGACTTTAAATAATCCTTCGTGAATAGA
GCAGGCAAGAAATACAAACCTTCATTACTTCCTTGAATCAAGGAGCACTACTGGAGTCAA
CTGCCAAAATTTTTAGAAGGTTTTTTTGTGACTTACTATACATTGTACTGTTAAGATCTA
CTGAATAAAGGATATTCTCTCGCTAAGGACCAAGTGTTTTAAAGTTTCAAGAAGTACTCC
AAGAACAATCTACTTCTTTCATCATCTGTTCATGAATTTATCCATGTTTGCTTAATGCTT
CTGCTAAGTATTAGCCAAAATCTAGCCATTTATATTTAGTTGTGTAAACCTAAATTAAAT
GCTGTAGTATGTTGTGGAATGTACTATATATCAAGATACAGAGAACATTGTTTTGGCATG
TCAGAGCCTTATTTGGTTAGCAGACTGCATGTGTTGGTATTCTTTTCTTTTTTAAGCCAG
TTATCTTGATGCACTGCAAAAGAAATTCAGTTTATGAGATAACTCTGAAAAGTCTGAGAT
AGGAGAATTTACAGTGATATTAATCTTTCCATGTCCCCCACTAAGCAACACTAAGCAGTT
CACACATGGATCCAAGGTAATTAAAGTGTGTTTTTCTGAAATTTTTTTTCATAAGGTAGT
TTTTCTAGCAAATGACATTCCCAAGATAGAGCTGTTGTGTTTGAAATCATTTCCCTTCTT
TAGTATTGAGTTATATACGTGTTTGTTTTTTTAACTTGAGAGCTGACTGTTGCTTAAGAA
GTTTTCTTATGGCAAAAATAATGTAAATAATTTACTATGATCTGCATTTTGCCAGGAACT
CATTTATTATTAAGGTTACCACTT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               908-1025, + strand, RNAz p=0.807767

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               908-1025, + strand, RNAz p=0.807767

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of BX648138, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of BX648138, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               117-1044, gnl|bosTau2|chr11 (20363702-20362766)
               

               
               117-1044, gnl|Hg17|chr2 (55429952-55429016)
               

               
               117-1044, gnl|Mm7|chr11 (29459700-29460618)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               117-1044, gnl|bosTau2|chr11 (20363702-20362766)
               

               
               117-1044, gnl|Hg17|chr2 (55429952-55429016)
               

               
               117-1044, gnl|Mm7|chr11 (29459700-29460618)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               tes (0.207814)
               

               
               fbs (0.175346)
               

               
               fhi (0.169578)
               

               
               fco (0.157208)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tes (0.207814)
               

               
               fbs (0.175346)
               

               
               fhi (0.169578)
               

               
               fco (0.157208)

	117-1044, gnl\|bosTau2\|chr11 (20363702-20362766)
	117-1044, gnl\|Hg17\|chr2 (55429952-55429016)
	117-1044, gnl\|Mm7\|chr11 (29459700-29460618)