Non-Coding RNA Search

Ss1.1-rfbs3920b_c7.5

Sequence:


               
               ATCGGTCCCAGCTGCGGCGTGCGGCCCAAGACACCTCCCGCGGTCCCAGGCCCGCTTTCC
CGATGGCCCGCTACGAGGAGGTGAGCGTGTCCGGCTACGAAGAGTTCATACAGGCTGTGA
AGCAGCACAATGGCAAGACCATTTTCGCCTACTTTTCCGGTTCTAAGGACGCCGAAGGGA
AAAGCTGGTGCCCCGACTGCGTGCAGGCTGAACCAGTTGTACGAGAGGGGCTGAAGCATA
CTGTTGAAGGATGTGTGTTCATCTACTGCCAAGTAGGAGAAAGACTTTATTGGAAAGATC
CAAATAATGACTTCAGGAAAAAGTTGAAATTAACCGCAGTGCCTACACTACTTAAATATG
GAACACCTCAAAAACTGGTAGAATCTGAGTGTCTTCAGACCAACCTCGTGGAGATGTTGT
TCTCTGAAGAGTAAGATTTGATGATGGCAATTGTGTCTTGATTTCCTGATTTGCTCTAGT
ATAAAAGAAACTGCACACTTGCTTTGAATTCATGTTAGCAATAAATAAATGATGATTAAA
AGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATCGGTCCCAGCTGCGGCGTGCGGCCCAAGACACCTCCCGCGGTCCCAGGCCCGCTTTCC
CGATGGCCCGCTACGAGGAGGTGAGCGTGTCCGGCTACGAAGAGTTCATACAGGCTGTGA
AGCAGCACAATGGCAAGACCATTTTCGCCTACTTTTCCGGTTCTAAGGACGCCGAAGGGA
AAAGCTGGTGCCCCGACTGCGTGCAGGCTGAACCAGTTGTACGAGAGGGGCTGAAGCATA
CTGTTGAAGGATGTGTGTTCATCTACTGCCAAGTAGGAGAAAGACTTTATTGGAAAGATC
CAAATAATGACTTCAGGAAAAAGTTGAAATTAACCGCAGTGCCTACACTACTTAAATATG
GAACACCTCAAAAACTGGTAGAATCTGAGTGTCTTCAGACCAACCTCGTGGAGATGTTGT
TCTCTGAAGAGTAAGATTTGATGATGGCAATTGTGTCTTGATTTCCTGATTTGCTCTAGT
ATAAAAGAAACTGCACACTTGCTTTGAATTCATGTTAGCAATAAATAAATGATGATTAAA
AGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61872642|ref|XP_593976.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61872642|ref|XP_593976.1|

Aligned organism(s): 8 entry(ies)

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Aligned organism(s): 8 entry(ies)

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               25-211, gnl|bosTau2|chr19 (19826705-19826519)
               

               
               25-211, gnl|Hg17|chr17 (6485091-6485275)
               

               
               25-211, gnl|Mm7|chr11 (72289156-72289346)
               


               
               337-540, gnl|bosTau2|chr2 (30878716-30878511)
               

               
               337-540, gnl|Hg17|chr17 (6486367-6487164)
               


               
               366-530, gnl|bosTau2|chr19 (19824724-19824561)
               

               
               366-530, gnl|Hg17|chr17 (6486995-6487152)
               

               
               366-530, gnl|Mm7|chr11 (72290989-72291304)

Aligned organism(s): 8 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               25-211, gnl|bosTau2|chr19 (19826705-19826519)
               

               
               25-211, gnl|Hg17|chr17 (6485091-6485275)
               

               
               25-211, gnl|Mm7|chr11 (72289156-72289346)
               


               
               337-540, gnl|bosTau2|chr2 (30878716-30878511)
               

               
               337-540, gnl|Hg17|chr17 (6486367-6487164)
               


               
               366-530, gnl|bosTau2|chr19 (19824724-19824561)
               

               
               366-530, gnl|Hg17|chr17 (6486995-6487152)
               

               
               366-530, gnl|Mm7|chr11 (72290989-72291304)

Expressed library(ies): 43 entry(ies)

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Expressed library(ies): 43 entry(ies)

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               cki (2.64375)
               

               
               sto (1.43859)
               

               
               cje (1.32188)
               

               
               cte (1.17096)
               

               
               cmu (1.11836)
               

               
               csk (0.985222)
               

               
               kid (0.908147)
               

               
               cbe (0.717703)
               

               
               cst (0.700182)
               

               
               che (0.68157)
               

               
               cut (0.679694)
               

               
               vin (0.665115)
               

               
               nje (0.66368)
               

               
               fco (0.628832)
               

               
               nlu (0.575043)
               

               
               rec (0.519211)
               

               
               jej (0.494609)
               

               
               spc (0.453463)
               

               
               eje (0.395335)
               

               
               ill (0.351185)
               

               
               mga (0.32041)
               

               
               ute (0.265569)
               

               
               cov (0.264306)
               

               
               thg (0.253582)
               

               
               bla (0.248694)
               

               
               pgl (0.236967)
               

               
               mgp (0.230681)
               

               
               ece (0.229305)
               

               
               tes (0.207814)
               

               
               fcc (0.197785)
               

               
               nep (0.183925)
               

               
               sag (0.182715)
               

               
               mgm (0.180343)
               

               
               fbs (0.175346)
               

               
               sin (0.174948)
               

               
               duo (0.172801)
               

               
               eye (0.170503)
               

               
               nco (0.161734)
               

               
               fat (0.147427)
               

               
               hlv (0.139256)
               

               
               sug (0.127291)
               

               
               ese (0.126502)
               

               
               med (0.116252)

Expressed library(ies): 43 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cki (2.64375)
               

               
               sto (1.43859)
               

               
               cje (1.32188)
               

               
               cte (1.17096)
               

               
               cmu (1.11836)
               

               
               csk (0.985222)
               

               
               kid (0.908147)
               

               
               cbe (0.717703)
               

               
               cst (0.700182)
               

               
               che (0.68157)
               

               
               cut (0.679694)
               

               
               vin (0.665115)
               

               
               nje (0.66368)
               

               
               fco (0.628832)
               

               
               nlu (0.575043)
               

               
               rec (0.519211)
               

               
               jej (0.494609)
               

               
               spc (0.453463)
               

               
               eje (0.395335)
               

               
               ill (0.351185)
               

               
               mga (0.32041)
               

               
               ute (0.265569)
               

               
               cov (0.264306)
               

               
               thg (0.253582)
               

               
               bla (0.248694)
               

               
               pgl (0.236967)
               

               
               mgp (0.230681)
               

               
               ece (0.229305)
               

               
               tes (0.207814)
               

               
               fcc (0.197785)
               

               
               nep (0.183925)
               

               
               sag (0.182715)
               

               
               mgm (0.180343)
               

               
               fbs (0.175346)
               

               
               sin (0.174948)
               

               
               duo (0.172801)
               

               
               eye (0.170503)
               

               
               nco (0.161734)
               

               
               fat (0.147427)
               

               
               hlv (0.139256)
               

               
               sug (0.127291)
               

               
               ese (0.126502)
               

               
               med (0.116252)

	25-211, gnl\|bosTau2\|chr19 (19826705-19826519)
	25-211, gnl\|Hg17\|chr17 (6485091-6485275)
	25-211, gnl\|Mm7\|chr11 (72289156-72289346)

	337-540, gnl\|bosTau2\|chr2 (30878716-30878511)
	337-540, gnl\|Hg17\|chr17 (6486367-6487164)

	366-530, gnl\|bosTau2\|chr19 (19824724-19824561)
	366-530, gnl\|Hg17\|chr17 (6486995-6487152)
	366-530, gnl\|Mm7\|chr11 (72290989-72291304)

	cki (2.64375)
	sto (1.43859)
	cje (1.32188)
	cte (1.17096)
	cmu (1.11836)
	csk (0.985222)
	kid (0.908147)
	cbe (0.717703)
	cst (0.700182)
	che (0.68157)
	cut (0.679694)
	vin (0.665115)
	nje (0.66368)
	fco (0.628832)
	nlu (0.575043)
	rec (0.519211)
	jej (0.494609)
	spc (0.453463)
	eje (0.395335)
	ill (0.351185)
	mga (0.32041)
	ute (0.265569)
	cov (0.264306)
	thg (0.253582)
	bla (0.248694)
	pgl (0.236967)
	mgp (0.230681)
	ece (0.229305)
	tes (0.207814)
	fcc (0.197785)
	nep (0.183925)
	sag (0.182715)
	mgm (0.180343)
	fbs (0.175346)
	sin (0.174948)
	duo (0.172801)
	eye (0.170503)
	nco (0.161734)
	fat (0.147427)
	hlv (0.139256)
	sug (0.127291)
	ese (0.126502)
	med (0.116252)