Ss1.1-rfbs3920b_p9.5
|
ACTATCAGACGCAGGAACGAGAAAGAATAAGGAAGGATGAATTGGATTACTTAAGAGAGA
GGCAGACAGTGGAAGACATGCAAGCTGAAGTTGACCAGCAAAGAGTTGAAGATGAAGCTT
GGTACGAAAAACAGGAACAACTACGTAAGGCTGAAGAAACAAGGAGAGAAATGCTCTTAC
AAGAAGAGGAGAAGATGATACAACAAAGAGAGAGACTAGCTGCTGTGAAAAGAGAGCTGA
AAGTAAAGGAAATGCACTTACAGGAAGCTGCAAGAAGACGTCTCTTACGAGAAGATGCAG
ATGCCTGTAGACGAAAAGCGGATCTTGAAGAACACATGTTTCATAGACTGATAGGAATGG
ATCAAACCCAGAACCAAAAAACCCAGAAGTTAATTGAAGAAAATTTGGCAAAAGCTGAAC
AAGCGTGTCTAAATACTGACTGGCACATTCAAGCTTTACATAAACAAAGATGCCATGATC
TACACCGAAACGAATGTTACCAGGAAATGGCTAAACTCCTTCGGAAAAACAGAAGGAAAG
AAATAGAAATATTAAACGCAATGAGGGAGAGGGAAGCCGAAAAGCGGGAGGAAGCTGAAG
AAAAAGACCTCCATTTGAAATCAGAAAAGAAAGCTTCTACTCTTTCAGAGGCATCTAGAA
AGTGGTTTCTAGAGAAGGAGATAAATGATGCTTTACATGCTCAGCACGCATGTAATAAAG
TGGTGCCCAGGTGCTACACTGAACGTGTTGCCTCAAGCTGTTTACCTAGAAACTCAGAAT
TAAATGGCATTTCTGCAGTGGAGTCCTCGACACAGAGTTCGTTAAACCAAAGAAAAGCAT
ACTGGGACAGCATGGAACCGGATCTTATGGCGAGAGTGAGAAATCTCCGCCAGAGACTCG
CCACCCAGGCTCGGAACAGATGTCAGACGCCTCACCTTTTGGCTACATATAAGATCAACT
TTTTGTATGAAAAATGTGTATATAAAAATGATGTGTTATATTTAATGCTGATGCTTTGGG
ACATGTAAATGGCTTCTTATACGTTTCACAATAAAAAAAAAAAAAAACTGTATATAAAAA
TGATGTGTTATATTTAATGCTGATGCTTTGGGACATGTAAATGGCTTCTTATACGTTTCA
CAATAAAAAAAA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
ACTATCAGACGCAGGAACGAGAAAGAATAAGGAAGGATGAATTGGATTACTTAAGAGAGA
GGCAGACAGTGGAAGACATGCAAGCTGAAGTTGACCAGCAAAGAGTTGAAGATGAAGCTT
GGTACGAAAAACAGGAACAACTACGTAAGGCTGAAGAAACAAGGAGAGAAATGCTCTTAC
AAGAAGAGGAGAAGATGATACAACAAAGAGAGAGACTAGCTGCTGTGAAAAGAGAGCTGA
AAGTAAAGGAAATGCACTTACAGGAAGCTGCAAGAAGACGTCTCTTACGAGAAGATGCAG
ATGCCTGTAGACGAAAAGCGGATCTTGAAGAACACATGTTTCATAGACTGATAGGAATGG
ATCAAACCCAGAACCAAAAAACCCAGAAGTTAATTGAAGAAAATTTGGCAAAAGCTGAAC
AAGCGTGTCTAAATACTGACTGGCACATTCAAGCTTTACATAAACAAAGATGCCATGATC
TACACCGAAACGAATGTTACCAGGAAATGGCTAAACTCCTTCGGAAAAACAGAAGGAAAG
AAATAGAAATATTAAACGCAATGAGGGAGAGGGAAGCCGAAAAGCGGGAGGAAGCTGAAG
AAAAAGACCTCCATTTGAAATCAGAAAAGAAAGCTTCTACTCTTTCAGAGGCATCTAGAA
AGTGGTTTCTAGAGAAGGAGATAAATGATGCTTTACATGCTCAGCACGCATGTAATAAAG
TGGTGCCCAGGTGCTACACTGAACGTGTTGCCTCAAGCTGTTTACCTAGAAACTCAGAAT
TAAATGGCATTTCTGCAGTGGAGTCCTCGACACAGAGTTCGTTAAACCAAAGAAAAGCAT
ACTGGGACAGCATGGAACCGGATCTTATGGCGAGAGTGAGAAATCTCCGCCAGAGACTCG
CCACCCAGGCTCGGAACAGATGTCAGACGCCTCACCTTTTGGCTACATATAAGATCAACT
TTTTGTATGAAAAATGTGTATATAAAAATGATGTGTTATATTTAATGCTGATGCTTTGGG
ACATGTAAATGGCTTCTTATACGTTTCACAATAAAAAAAAAAAAAAACTGTATATAAAAA
TGATGTGTTATATTTAATGCTGATGCTTTGGGACATGTAAATGGCTTCTTATACGTTTCA
CAATAAAAAAAA
|
|
60-214, gnl|bosTau2|chr14 (7976521-7976367) |
|
60-214, gnl|Hg17|chr8 (124210485-124210639) |
|
60-214, gnl|Mm7|chr15 (58018822-58018976) |
| |
|
388-584, gnl|bosTau2|chr14 (7967321-7967125) |
|
388-584, gnl|canFam2|chr13 (24569299-24569521) |
|
388-584, gnl|dasNov1|scaffold_97836 (119-333) |
|
388-584, gnl|galGal2|chr2 (145856114-145855891) |
|
388-584, gnl|hg17|chr8 (124223658-124223881) |
|
388-584, gnl|Hg17|chr8 (124223681-124223877) |
|
388-584, gnl|loxAfr1|scaffold_26277 (32688-32467) |
|
388-584, gnl|mm7|chr15 (58027383-58027602) |
|
388-584, gnl|Mm7|chr15 (58027403-58027599) |
|
388-584, gnl|monDom2|scaffold_3 (31618583-31618366) |
|
388-584, gnl|oryCun1|scaffold_78663 (467-245) |
|
388-584, gnl|panTro1|chr7 (126942366-126942589) |
|
388-584, gnl|rheMac2|chr8 (125723835-125724057) |
|
388-584, gnl|rn3|chr7 (94704645-94704864) |
| |
|
818-1151, gnl|bosTau2|chr14 (7956596-7956260) |
|
818-1151, gnl|Hg17|chr8 (124233228-124233557) |
|
818-1151, gnl|Mm7|chr15 (58035061-58035386) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
60-214, gnl|bosTau2|chr14 (7976521-7976367) |
|
60-214, gnl|Hg17|chr8 (124210485-124210639) |
|
60-214, gnl|Mm7|chr15 (58018822-58018976) |
| |
|
388-584, gnl|bosTau2|chr14 (7967321-7967125) |
|
388-584, gnl|canFam2|chr13 (24569299-24569521) |
|
388-584, gnl|dasNov1|scaffold_97836 (119-333) |
|
388-584, gnl|galGal2|chr2 (145856114-145855891) |
|
388-584, gnl|hg17|chr8 (124223658-124223881) |
|
388-584, gnl|Hg17|chr8 (124223681-124223877) |
|
388-584, gnl|loxAfr1|scaffold_26277 (32688-32467) |
|
388-584, gnl|mm7|chr15 (58027383-58027602) |
|
388-584, gnl|Mm7|chr15 (58027403-58027599) |
|
388-584, gnl|monDom2|scaffold_3 (31618583-31618366) |
|
388-584, gnl|oryCun1|scaffold_78663 (467-245) |
|
388-584, gnl|panTro1|chr7 (126942366-126942589) |
|
388-584, gnl|rheMac2|chr8 (125723835-125724057) |
|
388-584, gnl|rn3|chr7 (94704645-94704864) |
| |
|
818-1151, gnl|bosTau2|chr14 (7956596-7956260) |
|
818-1151, gnl|Hg17|chr8 (124233228-124233557) |
|
818-1151, gnl|Mm7|chr15 (58035061-58035386) |
|
thg (0.507164) |
|
sto (0.359648) |
|
csk (0.281492) |
|
lyg (0.266205) |
|
sug (0.254582) |
|
nlu (0.191681) |
|
gul (0.177588) |
|
fbs (0.175346) |
|
lin (0.145603) |
|
ova (0.129132) |
|
ese (0.126502) |
|
tra (0.123092) |
|
nbm (0.0993246) |
|
thg (0.507164) |
|
sto (0.359648) |
|
csk (0.281492) |
|
lyg (0.266205) |
|
sug (0.254582) |
|
nlu (0.191681) |
|
gul (0.177588) |
|
fbs (0.175346) |
|
lin (0.145603) |
|
ova (0.129132) |
|
ese (0.126502) |
|
tra (0.123092) |
|
nbm (0.0993246) |
