Non-Coding RNA Search

Ss1.1-rfbs3922b_c17.5

Sequence:


               
               GATTGTTTAAATTTAGTTAACTCTCCATGCTCTTCAGACTGTGATACTGTGTAAATGTCT
ATTCTGCTCTGGTTTGTGTGAACTGGGATGTTGGGGGTGTTGGTGGTTATCTTACCTGGG
GAAGTTCTTATGTTTATCTTGCTTTTCATGTGTCTTTCTGTAGACATATCTGAAGAGATG
GATTAAGAATGCTTGGGATTAAGGATTGTGGAGCACATTTCAATCATTTTAGGATTGTCA
AAAGGAGGATTGAGGAGGATCAGATCAATAATGGAGGCAATGGTATGACTCCAAGTGCTA
TTGTCACAGATGAAATTGGCAGTATTGACCTTATACTAAAAGGCAAGGGTTTAAAGTGAT
TATATACATCTATCTTAAAACACTTGAAAACATTTTATGCAGTTATATTTGGCTACAATT
GCTTTACTCTTTAAAACTCTGGCAATTGTGGCAAAATTACATGGCCCATTTTGTAACAAT
TTGTTTTGCTCCCTTCCCTTTTTTGTTTTATTAGGGACTAATGTGGGAAGAACTGATTAA
TTTGTCACAGTGCTTAGTTACAACTGTTAATGTGTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GATTGTTTAAATTTAGTTAACTCTCCATGCTCTTCAGACTGTGATACTGTGTAAATGTCT
ATTCTGCTCTGGTTTGTGTGAACTGGGATGTTGGGGGTGTTGGTGGTTATCTTACCTGGG
GAAGTTCTTATGTTTATCTTGCTTTTCATGTGTCTTTCTGTAGACATATCTGAAGAGATG
GATTAAGAATGCTTGGGATTAAGGATTGTGGAGCACATTTCAATCATTTTAGGATTGTCA
AAAGGAGGATTGAGGAGGATCAGATCAATAATGGAGGCAATGGTATGACTCCAAGTGCTA
TTGTCACAGATGAAATTGGCAGTATTGACCTTATACTAAAAGGCAAGGGTTTAAAGTGAT
TATATACATCTATCTTAAAACACTTGAAAACATTTTATGCAGTTATATTTGGCTACAATT
GCTTTACTCTTTAAAACTCTGGCAATTGTGGCAAAATTACATGGCCCATTTTGTAACAAT
TTGTTTTGCTCCCTTCCCTTTTTTGTTTTATTAGGGACTAATGTGGGAAGAACTGATTAA
TTTGTCACAGTGCTTAGTTACAACTGTTAATGTGTG

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               80-318, - strand, RNAz p=0.855991
               

               
               359-576, + strand, RNAz p=0.981766

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               80-318, - strand, RNAz p=0.855991
               

               
               359-576, + strand, RNAz p=0.981766

Predicted microRNA(s): 2 entry(ies)

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Predicted microRNA(s): 2 entry(ies)

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               111-204, + strand, RNAmicro p=0.997812
               

               
               379-491, + strand, RNAmicro p=0.963695

Predicted microRNA(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               111-204, + strand, RNAmicro p=0.997812
               

               
               379-491, + strand, RNAmicro p=0.963695

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of BC033785, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of BC033785, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-576, gnl|bosTau2|chr19 (4233738-4233166)
               

               
               1-576, gnl|Hg17|chr17 (53437561-53436987)
               

               
               1-576, gnl|Mm7|chr11 (88119722-88120283)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-576, gnl|bosTau2|chr19 (4233738-4233166)
               

               
               1-576, gnl|Hg17|chr17 (53437561-53436987)
               

               
               1-576, gnl|Mm7|chr11 (88119722-88120283)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               nep (0.183925)
               

               
               fbs (0.175346)
               

               
               cty (0.10408)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nep (0.183925)
               

               
               fbs (0.175346)
               

               
               cty (0.10408)

	80-318, - strand, RNAz p=0.855991
	359-576, + strand, RNAz p=0.981766

	111-204, + strand, RNAmicro p=0.997812
	379-491, + strand, RNAmicro p=0.963695

	1-576, gnl\|bosTau2\|chr19 (4233738-4233166)
	1-576, gnl\|Hg17\|chr17 (53437561-53436987)
	1-576, gnl\|Mm7\|chr11 (88119722-88120283)