Non-Coding RNA Search

Ss1.1-rfbs3923b_c23.5

Sequence:


               
               CAGACCACCGCCGCGCCGCCATCATGGACACGAGCCGTGTGCAGCCCATCAAGCTCGCCA
GGGTTACCAAGGTTCTGGGCAGGACAGGTTCGCAGGGACAGTGCACGCAGGTGCGGGTAG
AATTCATGGACGATACGAGTCGTTCCATCATCCGAAACGTGAAAGGCCCTGTTCGTGAGG
GTGATGTGCTCACCCTTTTGGAGTCAGAGCGAGAGGCTCGGAGGCTGCGCTGAAGTTGTG
GCTGGGTCCTGGATATCTGGATCGACCATTTGGCCCATCATGATCTGCCGTTAATAAAGT
GTTTATATTGTATGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGACCACCGCCGCGCCGCCATCATGGACACGAGCCGTGTGCAGCCCATCAAGCTCGCCA
GGGTTACCAAGGTTCTGGGCAGGACAGGTTCGCAGGGACAGTGCACGCAGGTGCGGGTAG
AATTCATGGACGATACGAGTCGTTCCATCATCCGAAACGTGAAAGGCCCTGTTCGTGAGG
GTGATGTGCTCACCCTTTTGGAGTCAGAGCGAGAGGCTCGGAGGCTGCGCTGAAGTTGTG
GCTGGGTCCTGGATATCTGGATCGACCATTTGGCCCATCATGATCTGCCGTTAATAAAGT
GTTTATATTGTATGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q5BKQ7_MOUSE

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q5BKQ7_MOUSE

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               3-343, gnl|bosTau2|chr27 (5263114-5263456)
               

               
               3-343, gnl|Hg17|chr11 (82078228-82078624)
               

               
               3-343, gnl|Mm7|chr5 (112988961-112989283)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-343, gnl|bosTau2|chr27 (5263114-5263456)
               

               
               3-343, gnl|Hg17|chr11 (82078228-82078624)
               

               
               3-343, gnl|Mm7|chr5 (112988961-112989283)

Expressed library(ies): 52 entry(ies)

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Expressed library(ies): 52 entry(ies)

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               cag (5.14061)
               

               
               amn (3.7594)
               

               
               fce (3.53069)
               

               
               eje (2.96501)
               

               
               nca (2.87435)
               

               
               cga (2.51186)
               

               
               nco (2.42601)
               

               
               cly (2.17155)
               

               
               lnt (2.13462)
               

               
               fty (2.11008)
               

               
               mas (2.10305)
               

               
               ece (2.06375)
               

               
               nep (2.02317)
               

               
               med (1.97628)
               

               
               nms (1.92472)
               

               
               fli (1.82593)
               

               
               ton (1.755)
               

               
               nlu (1.72513)
               

               
               cov (1.71799)
               

               
               pty (1.71257)
               

               
               mcp (1.53584)
               

               
               jca (1.48148)
               

               
               csp (1.45068)
               

               
               eru (1.44058)
               

               
               ebs (1.41961)
               

               
               nje (1.32736)
               

               
               ese (1.26502)
               

               
               fbs (1.22742)
               

               
               eep (1.22564)
               

               
               eli (1.21451)
               

               
               elu (1.15607)
               

               
               hyp (1.14269)
               

               
               cli (1.06968)
               

               
               ecc (0.920281)
               

               
               eye (0.852515)
               

               
               ute (0.796707)
               

               
               col (0.780031)
               

               
               ill (0.702371)
               

               
               nmm (0.664011)
               

               
               pro (0.512033)
               

               
               hlv (0.417769)
               

               
               jej (0.395687)
               

               
               sto (0.359648)
               

               
               fhi (0.339155)
               

               
               che (0.272628)
               

               
               cbl (0.229595)
               

               
               nbm (0.198649)
               

               
               fcc (0.197785)
               

               
               ctl (0.153069)
               

               
               spl (0.143184)
               

               
               csk (0.140746)
               

               
               pgl (0.118483)

Expressed library(ies): 52 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cag (5.14061)
               

               
               amn (3.7594)
               

               
               fce (3.53069)
               

               
               eje (2.96501)
               

               
               nca (2.87435)
               

               
               cga (2.51186)
               

               
               nco (2.42601)
               

               
               cly (2.17155)
               

               
               lnt (2.13462)
               

               
               fty (2.11008)
               

               
               mas (2.10305)
               

               
               ece (2.06375)
               

               
               nep (2.02317)
               

               
               med (1.97628)
               

               
               nms (1.92472)
               

               
               fli (1.82593)
               

               
               ton (1.755)
               

               
               nlu (1.72513)
               

               
               cov (1.71799)
               

               
               pty (1.71257)
               

               
               mcp (1.53584)
               

               
               jca (1.48148)
               

               
               csp (1.45068)
               

               
               eru (1.44058)
               

               
               ebs (1.41961)
               

               
               nje (1.32736)
               

               
               ese (1.26502)
               

               
               fbs (1.22742)
               

               
               eep (1.22564)
               

               
               eli (1.21451)
               

               
               elu (1.15607)
               

               
               hyp (1.14269)
               

               
               cli (1.06968)
               

               
               ecc (0.920281)
               

               
               eye (0.852515)
               

               
               ute (0.796707)
               

               
               col (0.780031)
               

               
               ill (0.702371)
               

               
               nmm (0.664011)
               

               
               pro (0.512033)
               

               
               hlv (0.417769)
               

               
               jej (0.395687)
               

               
               sto (0.359648)
               

               
               fhi (0.339155)
               

               
               che (0.272628)
               

               
               cbl (0.229595)
               

               
               nbm (0.198649)
               

               
               fcc (0.197785)
               

               
               ctl (0.153069)
               

               
               spl (0.143184)
               

               
               csk (0.140746)
               

               
               pgl (0.118483)

	3-343, gnl\|bosTau2\|chr27 (5263114-5263456)
	3-343, gnl\|Hg17\|chr11 (82078228-82078624)
	3-343, gnl\|Mm7\|chr5 (112988961-112989283)

	cag (5.14061)
	amn (3.7594)
	fce (3.53069)
	eje (2.96501)
	nca (2.87435)
	cga (2.51186)
	nco (2.42601)
	cly (2.17155)
	lnt (2.13462)
	fty (2.11008)
	mas (2.10305)
	ece (2.06375)
	nep (2.02317)
	med (1.97628)
	nms (1.92472)
	fli (1.82593)
	ton (1.755)
	nlu (1.72513)
	cov (1.71799)
	pty (1.71257)
	mcp (1.53584)
	jca (1.48148)
	csp (1.45068)
	eru (1.44058)
	ebs (1.41961)
	nje (1.32736)
	ese (1.26502)
	fbs (1.22742)
	eep (1.22564)
	eli (1.21451)
	elu (1.15607)
	hyp (1.14269)
	cli (1.06968)
	ecc (0.920281)
	eye (0.852515)
	ute (0.796707)
	col (0.780031)
	ill (0.702371)
	nmm (0.664011)
	pro (0.512033)
	hlv (0.417769)
	jej (0.395687)
	sto (0.359648)
	fhi (0.339155)
	che (0.272628)
	cbl (0.229595)
	nbm (0.198649)
	fcc (0.197785)
	ctl (0.153069)
	spl (0.143184)
	csk (0.140746)
	pgl (0.118483)