Non-Coding RNA Search

Ss1.1-rfbs3923b_d17.5

Sequence:


               
               TGCTAGTTTTTATAATTTATTTTTAATTTATAGTTTAAAGTACTTCAGATCATAAGGAGA
AAATACTTGAAAAAGTTATATTTCTGCCCTCAATAAGCACCATTTTTATTAATAAAGAAT
GCACATATTTCAGATGTGATTCGATAGTTAAAGGACTGTTGCTTTGACCTGTGATTAAAT
TGAGCATTCAGTTTTGCTTGACTAAACTGAAATGATTCAATTAATACCCAGTACTTTGGT
CTAAGTAGGAGATCTTATGGACAGGTTTTAATGCCAATACAGGTGAGAACCAGATTGGCA
AAGAAGATTGTCTTGTCTTTGGATACAGAAGTCCAAATCAGTGCATACATCACTCATTTC
ATCTCCTATTGCTAGGAAGTCTCCATCCCCCAGCATTGCAAGTGTTTTCCAGATGCTCTT
AGCTGTTGTCTTGTGCTGTGGAAATGGAAGAAACCATCTTCACAGACTGTAGGAGAATTC
AGCATATAATTTCTTAATAAATACTGTTTCTTTTAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGCTAGTTTTTATAATTTATTTTTAATTTATAGTTTAAAGTACTTCAGATCATAAGGAGA
AAATACTTGAAAAAGTTATATTTCTGCCCTCAATAAGCACCATTTTTATTAATAAAGAAT
GCACATATTTCAGATGTGATTCGATAGTTAAAGGACTGTTGCTTTGACCTGTGATTAAAT
TGAGCATTCAGTTTTGCTTGACTAAACTGAAATGATTCAATTAATACCCAGTACTTTGGT
CTAAGTAGGAGATCTTATGGACAGGTTTTAATGCCAATACAGGTGAGAACCAGATTGGCA
AAGAAGATTGTCTTGTCTTTGGATACAGAAGTCCAAATCAGTGCATACATCACTCATTTC
ATCTCCTATTGCTAGGAAGTCTCCATCCCCCAGCATTGCAAGTGTTTTCCAGATGCTCTT
AGCTGTTGTCTTGTGCTGTGGAAATGGAAGAAACCATCTTCACAGACTGTAGGAGAATTC
AGCATATAATTTCTTAATAAATACTGTTTCTTTTAAAAAAAAAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               403-522, - strand, RNAz p=0.629491

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               403-522, - strand, RNAz p=0.629491

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-522, gnl|bosTau2|chr14 (47535089-47535605)
               

               
               1-522, gnl|Hg17|chr8 (85996139-85996634)
               

               
               1-522, gnl|Mm7|chr3 (14182952-14183458)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-522, gnl|bosTau2|chr14 (47535089-47535605)
               

               
               1-522, gnl|Hg17|chr8 (85996139-85996634)
               

               
               1-522, gnl|Mm7|chr3 (14182952-14183458)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               fbs (0.175346)
               

               
               spc (0.113366)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fbs (0.175346)
               

               
               spc (0.113366)

	1-522, gnl\|bosTau2\|chr14 (47535089-47535605)
	1-522, gnl\|Hg17\|chr8 (85996139-85996634)
	1-522, gnl\|Mm7\|chr3 (14182952-14183458)