Non-Coding RNA Search

Ss1.1-rfbs3924b_b11.5

Sequence:


               
               GTCTCCTACCAGCTGAGCCCCCCGGGGGGCACCACCGCAGATGCCCTGGTCCGGGCCAGG
GCCCACCACACCCTGGCTGAGCTCAAGCGCCAGCGGGCCGCAGCTAAGCTGCAGCGGCCC
CCACCTGAGGGGCCCGAGGCCACGGAGTCTGGCCCGCCTGTGGACATGGAGGCCGCCCGG
CTGGAGTGTGGCTCCAGGGCTGGGGGAGACCCGCCCCTGGTGAGACTCACAGCCCCCTCA
GAGGAGGCCCCCCTGGAGAAGAGACCATGCTGTCTGCTCATGTGAGGGCTGCTTCAGGGC
CCCTGCCCTGTGGACCCCAAGGCACGCCCCCGCCAGAACGCCAGCCTCCTCCCTCAGGGG
CAGACCTGCGGCAGAGGCCGTGCCCGGGAGGCACCTGGCTGCCGAGACCTGGTTTCATCC
TGTGACTCTCGATAAAGGGCCATTATGGAGGTGTCTCAGCTGCTACGACTCTACCAGGCT
CGGGGCTGGGGGGCGCTGCCCGCGGAGGATCTGCTGCTCTACCTGAAGAGGCTGGAGCAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTCTCCTACCAGCTGAGCCCCCCGGGGGGCACCACCGCAGATGCCCTGGTCCGGGCCAGG
GCCCACCACACCCTGGCTGAGCTCAAGCGCCAGCGGGCCGCAGCTAAGCTGCAGCGGCCC
CCACCTGAGGGGCCCGAGGCCACGGAGTCTGGCCCGCCTGTGGACATGGAGGCCGCCCGG
CTGGAGTGTGGCTCCAGGGCTGGGGGAGACCCGCCCCTGGTGAGACTCACAGCCCCCTCA
GAGGAGGCCCCCCTGGAGAAGAGACCATGCTGTCTGCTCATGTGAGGGCTGCTTCAGGGC
CCCTGCCCTGTGGACCCCAAGGCACGCCCCCGCCAGAACGCCAGCCTCCTCCCTCAGGGG
CAGACCTGCGGCAGAGGCCGTGCCCGGGAGGCACCTGGCTGCCGAGACCTGGTTTCATCC
TGTGACTCTCGATAAAGGGCCATTATGGAGGTGTCTCAGCTGCTACGACTCTACCAGGCT
CGGGGCTGGGGGGCGCTGCCCGCGGAGGATCTGCTGCTCTACCTGAAGAGGCTGGAGCAC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|33411808|emb|CAD58809.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|33411808|emb|CAD58809.1|

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               151-270, - strand, RNAz p=0.833714
               

               
               163-264, - strand, RNAz p=0.839347

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               151-270, - strand, RNAz p=0.833714
               

               
               163-264, - strand, RNAz p=0.839347

Aligned organism(s): 18 entry(ies)

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Aligned organism(s): 18 entry(ies)

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               1-288, gnl|bosTau2|chr14 (3263071-3262784)
               

               
               1-288, gnl|canFam2|chr13 (40952193-40952487)
               

               
               1-288, gnl|danRer3|chr12 (16556822-16556475)
               

               
               1-288, gnl|fr1|chrUn (221273065-221273452)
               

               
               1-288, gnl|hg17|chr8 (145697791-145698097)
               

               
               1-288, gnl|Hg17|chr8 (145697801-145698096)
               

               
               1-288, gnl|loxAfr1|scaffold_205625 (1180-880)
               

               
               1-288, gnl|mm7|chr15 (76776930-76777229)
               

               
               1-288, gnl|Mm7|chr15 (76776940-76777227)
               

               
               1-288, gnl|monDom2|scaffold_79 (3563353-3563668)
               

               
               1-288, gnl|panTro1|chr7 (148953958-148954264)
               

               
               1-288, gnl|rheMac2|chr8 (147166940-147167246)
               

               
               1-288, gnl|rn3|chr7 (114777908-114778207)
               

               
               1-288, gnl|tetNig1|chr6 (1283795-1283402)
               

               
               1-288, gnl|xenTro1|scaffold_2485 (24685-24377)
               


               
               299-447, gnl|bosTau2|chr14 (3262741-3262596)
               

               
               299-447, gnl|Hg17|chr8 (145698146-145698305)
               

               
               299-447, gnl|Mm7|chr15 (76777314-76777464)

Aligned organism(s): 18 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-288, gnl|bosTau2|chr14 (3263071-3262784)
               

               
               1-288, gnl|canFam2|chr13 (40952193-40952487)
               

               
               1-288, gnl|danRer3|chr12 (16556822-16556475)
               

               
               1-288, gnl|fr1|chrUn (221273065-221273452)
               

               
               1-288, gnl|hg17|chr8 (145697791-145698097)
               

               
               1-288, gnl|Hg17|chr8 (145697801-145698096)
               

               
               1-288, gnl|loxAfr1|scaffold_205625 (1180-880)
               

               
               1-288, gnl|mm7|chr15 (76776930-76777229)
               

               
               1-288, gnl|Mm7|chr15 (76776940-76777227)
               

               
               1-288, gnl|monDom2|scaffold_79 (3563353-3563668)
               

               
               1-288, gnl|panTro1|chr7 (148953958-148954264)
               

               
               1-288, gnl|rheMac2|chr8 (147166940-147167246)
               

               
               1-288, gnl|rn3|chr7 (114777908-114778207)
               

               
               1-288, gnl|tetNig1|chr6 (1283795-1283402)
               

               
               1-288, gnl|xenTro1|scaffold_2485 (24685-24377)
               


               
               299-447, gnl|bosTau2|chr14 (3262741-3262596)
               

               
               299-447, gnl|Hg17|chr8 (145698146-145698305)
               

               
               299-447, gnl|Mm7|chr15 (76777314-76777464)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               fbs (0.175346)
               

               
               jca (0.11396)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fbs (0.175346)
               

               
               jca (0.11396)

	151-270, - strand, RNAz p=0.833714
	163-264, - strand, RNAz p=0.839347

	1-288, gnl\|bosTau2\|chr14 (3263071-3262784)
	1-288, gnl\|canFam2\|chr13 (40952193-40952487)
	1-288, gnl\|danRer3\|chr12 (16556822-16556475)
	1-288, gnl\|fr1\|chrUn (221273065-221273452)
	1-288, gnl\|hg17\|chr8 (145697791-145698097)
	1-288, gnl\|Hg17\|chr8 (145697801-145698096)
	1-288, gnl\|loxAfr1\|scaffold_205625 (1180-880)
	1-288, gnl\|mm7\|chr15 (76776930-76777229)
	1-288, gnl\|Mm7\|chr15 (76776940-76777227)
	1-288, gnl\|monDom2\|scaffold_79 (3563353-3563668)
	1-288, gnl\|panTro1\|chr7 (148953958-148954264)
	1-288, gnl\|rheMac2\|chr8 (147166940-147167246)
	1-288, gnl\|rn3\|chr7 (114777908-114778207)
	1-288, gnl\|tetNig1\|chr6 (1283795-1283402)
	1-288, gnl\|xenTro1\|scaffold_2485 (24685-24377)

	299-447, gnl\|bosTau2\|chr14 (3262741-3262596)
	299-447, gnl\|Hg17\|chr8 (145698146-145698305)
	299-447, gnl\|Mm7\|chr15 (76777314-76777464)