Non-Coding RNA Search

Ss1.1-rfbs3925b_j2.5

Sequence:


               
               CCCGGGGAGCTGCTCAGCCCGCTGGTGCTCAACTCCGTGCTGAGCAAGGCCCTGCAGTAC
AGCCTGCACGGTGACACCCCGCACGCGGCCAACCTCTCCTTCGCCCTCAAGTTCCTGCCT
GAGGCGTTTGCCCCCAACGCCCCGGACGTGCTCAGTTGCCTGGAGCTCAGGTACAAGGTT
GACTGGCCCCTCAACATCGTGGTCACCGAGGGCTGCCTGAGCAGGTACAGCGGCATCTTC
TCCTTCCTGCTGCAGCTGAAGCTCATGATGTGGACGCTCAAGGATGTCTGCTTCCACCTC
AAGCGCACGGCGCGGATGAGCCACGTGGCCAGCTCAGTGCAGTTCCGCCAGCTGCAGCTG
TTCAAGCACGAGATGCAGCACTTCGTGAAAGTCATCCAGGGGTACATCGCCAACCAGATC
CTGCACGTCACCTGGTGCGAGTTCCGGGCCAGGCTGGCCTCCGTGGGCGACCTGGAGGAG
ATCCAGCGTGCCCACGCCGAGTACCTGCACAAGGCTGTCTTCAGGGGCCTGCTGACGGAG
AAGGCGGCGCCGGCGATGAACATCATCCACAGCCTCTTCAGCCTAGTCCTCAAGTTCCGC
AGCCAGCTCATCTCCCAGCCCTGGGGCCTGGCCGGTGGCCCCCACGGCGCCGAGCACCCC
AACTTCGCCCTCATGCAGCAGTCCTACAGCACCTTCAAGTACTACTCCCACTTCCTCTTC
AAAGTGGTGAGCAAGCTGGTGAATCGAGGCTACCAGCCCCACCTGGAGGACTTCCTGCTG
CGCATCAACTTCAACAACTACTACCAGGACGCCTGAGGGCCGGCCCGCCCCGCCAGGGGC
CTGCGTGGGGAATAAAGGTGCTGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCCGGGGAGCTGCTCAGCCCGCTGGTGCTCAACTCCGTGCTGAGCAAGGCCCTGCAGTAC
AGCCTGCACGGTGACACCCCGCACGCGGCCAACCTCTCCTTCGCCCTCAAGTTCCTGCCT
GAGGCGTTTGCCCCCAACGCCCCGGACGTGCTCAGTTGCCTGGAGCTCAGGTACAAGGTT
GACTGGCCCCTCAACATCGTGGTCACCGAGGGCTGCCTGAGCAGGTACAGCGGCATCTTC
TCCTTCCTGCTGCAGCTGAAGCTCATGATGTGGACGCTCAAGGATGTCTGCTTCCACCTC
AAGCGCACGGCGCGGATGAGCCACGTGGCCAGCTCAGTGCAGTTCCGCCAGCTGCAGCTG
TTCAAGCACGAGATGCAGCACTTCGTGAAAGTCATCCAGGGGTACATCGCCAACCAGATC
CTGCACGTCACCTGGTGCGAGTTCCGGGCCAGGCTGGCCTCCGTGGGCGACCTGGAGGAG
ATCCAGCGTGCCCACGCCGAGTACCTGCACAAGGCTGTCTTCAGGGGCCTGCTGACGGAG
AAGGCGGCGCCGGCGATGAACATCATCCACAGCCTCTTCAGCCTAGTCCTCAAGTTCCGC
AGCCAGCTCATCTCCCAGCCCTGGGGCCTGGCCGGTGGCCCCCACGGCGCCGAGCACCCC
AACTTCGCCCTCATGCAGCAGTCCTACAGCACCTTCAAGTACTACTCCCACTTCCTCTTC
AAAGTGGTGAGCAAGCTGGTGAATCGAGGCTACCAGCCCCACCTGGAGGACTTCCTGCTG
CGCATCAACTTCAACAACTACTACCAGGACGCCTGAGGGCCGGCCCGCCCCGCCAGGGGC
CTGCGTGGGGAATAAAGGTGCTGC

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|50793209|ref|XP_423627.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|50793209|ref|XP_423627.1|

Aligned organism(s): 20 entry(ies)

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Aligned organism(s): 20 entry(ies)

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               1-179, gnl|bosTau2|chr5 (76038602-76038780)
               

               
               1-179, gnl|canFam2|chr10 (20014310-20014087)
               

               
               1-179, gnl|danRer3|chrNA (252673055-252673256)
               

               
               1-179, gnl|fr1|chrUn (66942901-66942683)
               

               
               1-179, gnl|galGal2|chr1 (17494732-17494519)
               

               
               1-179, gnl|hg17|chr22 (48959585-48959806)
               

               
               1-179, gnl|Hg17|chr22 (48959765-48959587)
               

               
               1-179, gnl|loxAfr1|scaffold_57448 (6195-5981)
               

               
               1-179, gnl|mm7|chr15 (89183693-89183914)
               

               
               1-179, gnl|Mm7|chr15 (89183873-89183695)
               

               
               1-179, gnl|monDom2|scaffold_119 (508685-508915)
               

               
               1-179, gnl|panTro1|chr23_random (16254568-16254347)
               

               
               1-179, gnl|rheMac2|chr10 (94223660-94223881)
               

               
               1-179, gnl|rn3|chr7 (127438791-127439012)
               

               
               1-179, gnl|tetNig1|chr13 (9206676-9206468)
               

               
               1-179, gnl|xenTro1|scaffold_668 (564472-564264)
               


               
               288-673, gnl|bosTau2|chr5 (76039045-76039431)
               


               
               707-823, gnl|bosTau2|chr5 (76039496-76039610)
               

               
               707-823, gnl|Hg17|chr22 (48958730-48958608)
               

               
               707-823, gnl|Mm7|chr15 (89182855-89182737)

Aligned organism(s): 20 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-179, gnl|bosTau2|chr5 (76038602-76038780)
               

               
               1-179, gnl|canFam2|chr10 (20014310-20014087)
               

               
               1-179, gnl|danRer3|chrNA (252673055-252673256)
               

               
               1-179, gnl|fr1|chrUn (66942901-66942683)
               

               
               1-179, gnl|galGal2|chr1 (17494732-17494519)
               

               
               1-179, gnl|hg17|chr22 (48959585-48959806)
               

               
               1-179, gnl|Hg17|chr22 (48959765-48959587)
               

               
               1-179, gnl|loxAfr1|scaffold_57448 (6195-5981)
               

               
               1-179, gnl|mm7|chr15 (89183693-89183914)
               

               
               1-179, gnl|Mm7|chr15 (89183873-89183695)
               

               
               1-179, gnl|monDom2|scaffold_119 (508685-508915)
               

               
               1-179, gnl|panTro1|chr23_random (16254568-16254347)
               

               
               1-179, gnl|rheMac2|chr10 (94223660-94223881)
               

               
               1-179, gnl|rn3|chr7 (127438791-127439012)
               

               
               1-179, gnl|tetNig1|chr13 (9206676-9206468)
               

               
               1-179, gnl|xenTro1|scaffold_668 (564472-564264)
               


               
               288-673, gnl|bosTau2|chr5 (76039045-76039431)
               


               
               707-823, gnl|bosTau2|chr5 (76039496-76039610)
               

               
               707-823, gnl|Hg17|chr22 (48958730-48958608)
               

               
               707-823, gnl|Mm7|chr15 (89182855-89182737)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               fbs (0.175346)
               

               
               csp (0.161186)
               

               
               hyp (0.142837)
               

               
               lnt (0.142308)
               

               
               ebs (0.118301)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fbs (0.175346)
               

               
               csp (0.161186)
               

               
               hyp (0.142837)
               

               
               lnt (0.142308)
               

               
               ebs (0.118301)

	1-179, gnl\|bosTau2\|chr5 (76038602-76038780)
	1-179, gnl\|canFam2\|chr10 (20014310-20014087)
	1-179, gnl\|danRer3\|chrNA (252673055-252673256)
	1-179, gnl\|fr1\|chrUn (66942901-66942683)
	1-179, gnl\|galGal2\|chr1 (17494732-17494519)
	1-179, gnl\|hg17\|chr22 (48959585-48959806)
	1-179, gnl\|Hg17\|chr22 (48959765-48959587)
	1-179, gnl\|loxAfr1\|scaffold_57448 (6195-5981)
	1-179, gnl\|mm7\|chr15 (89183693-89183914)
	1-179, gnl\|Mm7\|chr15 (89183873-89183695)
	1-179, gnl\|monDom2\|scaffold_119 (508685-508915)
	1-179, gnl\|panTro1\|chr23_random (16254568-16254347)
	1-179, gnl\|rheMac2\|chr10 (94223660-94223881)
	1-179, gnl\|rn3\|chr7 (127438791-127439012)
	1-179, gnl\|tetNig1\|chr13 (9206676-9206468)
	1-179, gnl\|xenTro1\|scaffold_668 (564472-564264)

	288-673, gnl\|bosTau2\|chr5 (76039045-76039431)

	707-823, gnl\|bosTau2\|chr5 (76039496-76039610)
	707-823, gnl\|Hg17\|chr22 (48958730-48958608)
	707-823, gnl\|Mm7\|chr15 (89182855-89182737)

	fbs (0.175346)
	csp (0.161186)
	hyp (0.142837)
	lnt (0.142308)
	ebs (0.118301)