Non-Coding RNA Search

Ss1.1-rfbs3927b_j7.5

Sequence:


               
               CAGGACAAGCCCTGGAGGAGGTGCCCCTGGAGCCACCCCTTTCTGCCCTAAACCCGGTCT
CCCTGCCCCCTTGACGCTGCTGATTCAGGCTGTGGCCTCTGAGTATTTATGCAGTGCAGT
CTGCCTGACGCCAGCCGCGCCTCCCAGGGTCCCTCCCAGGGTCACCCCAGGAGCTGGGCT
GTAGATGAGTTGTTGGGAAAGGGGGGGAGCTGAGAGAGGAAAGTGGGCATCTCCCAACTT
CTCCCCTCTGCACTCCTGATGAAGCTCCCTGCCCTTAATAAACTGGCTGAGTGTGGAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGGACAAGCCCTGGAGGAGGTGCCCCTGGAGCCACCCCTTTCTGCCCTAAACCCGGTCT
CCCTGCCCCCTTGACGCTGCTGATTCAGGCTGTGGCCTCTGAGTATTTATGCAGTGCAGT
CTGCCTGACGCCAGCCGCGCCTCCCAGGGTCCCTCCCAGGGTCACCCCAGGAGCTGGGCT
GTAGATGAGTTGTTGGGAAAGGGGGGGAGCTGAGAGAGGAAAGTGGGCATCTCCCAACTT
CTCCCCTCTGCACTCCTGATGAAGCTCCCTGCCCTTAATAAACTGGCTGAGTGTGGAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-297, gnl|bosTau2|chr2 (68782008-68782292)
               

               
               1-297, gnl|Hg17|chr2 (220229452-220229181)
               

               
               1-297, gnl|Mm7|chr1 (75701027-75700767)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-297, gnl|bosTau2|chr2 (68782008-68782292)
               

               
               1-297, gnl|Hg17|chr2 (220229452-220229181)
               

               
               1-297, gnl|Mm7|chr1 (75701027-75700767)

Expressed library(ies): 8 entry(ies)

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Expressed library(ies): 8 entry(ies)

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               amn (0.417711)
               

               
               nca (0.273748)
               

               
               fbs (0.175346)
               

               
               fhi (0.169578)
               

               
               pty (0.142714)
               

               
               ute (0.132784)
               

               
               cov (0.132153)
               

               
               eep (0.122564)

Expressed library(ies): 8 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               amn (0.417711)
               

               
               nca (0.273748)
               

               
               fbs (0.175346)
               

               
               fhi (0.169578)
               

               
               pty (0.142714)
               

               
               ute (0.132784)
               

               
               cov (0.132153)
               

               
               eep (0.122564)

	1-297, gnl\|bosTau2\|chr2 (68782008-68782292)
	1-297, gnl\|Hg17\|chr2 (220229452-220229181)
	1-297, gnl\|Mm7\|chr1 (75701027-75700767)

	amn (0.417711)
	nca (0.273748)
	fbs (0.175346)
	fhi (0.169578)
	pty (0.142714)
	ute (0.132784)
	cov (0.132153)
	eep (0.122564)