Non-Coding RNA Search

Ss1.1-rfbs3927b_n2.5

Sequence:


               
               AATAATGTCATGAAATAAATATCATTAATGCCATTTTGCCAAGGAGACAGCTGAGTCATT
TGCACACTCTGATCCACCTGATAAATGGAACTGGGATAGCTCTCTTTATGGCTTTCTATT
TCAATTGATTAACCTATAGCAATAGGCTTTTTAATTTTTTAAAAGTTTTATTGGAGTATA
GTTGATTTAGAATGTTGTGTTGTGTTATTTAGGCTTTTTTATTTTTATTTCTATATCTCT
GAAAAATCAAGATTTTATATCAAAGAGCAAAGTTTTTATATGTCACAGACAAAAAGGTTA
AAAGACCCAATTTTAAAAATTCTATTCACTGAGAAGTAAATTTTGCTAATTATTGTTTTT
CTTTGTGTGTGTGTATCTGTCTGTCTATCTATCTACCTATCCATCTGTCAATGTATCGGT
CTTTTAGAATGGAAAGTCTTAATCTTTAAAAATCAAACATGAACAGCCTTATATAAATTA
AATAACTACCTTGAATTTTTTAAAATGTACAAGAAAACCGTAGATTGTATGTATATTTCA
AAACAAAATGTAATAATAAATATGCTTTTAGAAGTAGGTTATGCATATTAAGTAATTATT
TGAGAGCATACCATTGATTAAATTCTGCAGTGTTATAGGTAAGGTTTCCCTTCTAGATTT
TTTTTTCAGCTCTATTGAAATATAATTTACAAAATTGTAAGATATTTAAAATGTACACCG
TGATGATTTGATAGAAGCATACACTGTGAAAGTGTTTTTCCCATCTAGTTAATTAACACA
TCCATCACCTTCTGTATTTATCTTTTTTTTAAAAGAAGACATTTAAGTTCTGCTCTCTTA
ACAAATTTCGATTGTTCATACAGTGTTATCAACTATAGTCACTATGTTACACATTACATT
TTCAGACCTTATTCATCTTATAGCTGAAAGTTTGTACCATTTTATCAACCTCTCTCTAAT
TTCCTCACTCCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AATAATGTCATGAAATAAATATCATTAATGCCATTTTGCCAAGGAGACAGCTGAGTCATT
TGCACACTCTGATCCACCTGATAAATGGAACTGGGATAGCTCTCTTTATGGCTTTCTATT
TCAATTGATTAACCTATAGCAATAGGCTTTTTAATTTTTTAAAAGTTTTATTGGAGTATA
GTTGATTTAGAATGTTGTGTTGTGTTATTTAGGCTTTTTTATTTTTATTTCTATATCTCT
GAAAAATCAAGATTTTATATCAAAGAGCAAAGTTTTTATATGTCACAGACAAAAAGGTTA
AAAGACCCAATTTTAAAAATTCTATTCACTGAGAAGTAAATTTTGCTAATTATTGTTTTT
CTTTGTGTGTGTGTATCTGTCTGTCTATCTATCTACCTATCCATCTGTCAATGTATCGGT
CTTTTAGAATGGAAAGTCTTAATCTTTAAAAATCAAACATGAACAGCCTTATATAAATTA
AATAACTACCTTGAATTTTTTAAAATGTACAAGAAAACCGTAGATTGTATGTATATTTCA
AAACAAAATGTAATAATAAATATGCTTTTAGAAGTAGGTTATGCATATTAAGTAATTATT
TGAGAGCATACCATTGATTAAATTCTGCAGTGTTATAGGTAAGGTTTCCCTTCTAGATTT
TTTTTTCAGCTCTATTGAAATATAATTTACAAAATTGTAAGATATTTAAAATGTACACCG
TGATGATTTGATAGAAGCATACACTGTGAAAGTGTTTTTCCCATCTAGTTAATTAACACA
TCCATCACCTTCTGTATTTATCTTTTTTTTAAAAGAAGACATTTAAGTTCTGCTCTCTTA
ACAAATTTCGATTGTTCATACAGTGTTATCAACTATAGTCACTATGTTACACATTACATT
TTCAGACCTTATTCATCTTATAGCTGAAAGTTTGTACCATTTTATCAACCTCTCTCTAAT
TTCCTCACTCCC

Aligned organism(s): 1 entry(ies)

More info

Aligned organism(s): 1 entry(ies)

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               660-951, gnl|bosTau2|chr22 (7111401-7111092)

Aligned organism(s): 1 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               660-951, gnl|bosTau2|chr22 (7111401-7111092)

Expressed library(ies): 3 entry(ies)

More info

Expressed library(ies): 3 entry(ies)

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               hyp (0.42851)
               

               
               fbs (0.175346)
               

               
               fco (0.157208)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hyp (0.42851)
               

               
               fbs (0.175346)
               

               
               fco (0.157208)