Non-Coding RNA Search

Ss1.1-rfbs3927b_p10.5

Sequence:


               
               AGTGTTTTTTTTCAAAGGTAATGAAAATGGTATGATTTTGTCAAAGGACTTTGAACTATA
CTTATATCCGTTAAGTCCCAGAATGTACTTTAAAGTTAATGATCTGCCATACATTATCAT
TAGGGGGTGCTAAGGAGCAACTCATTTTAAGGTGATGAAATCACTGTTCAATTCTCATTT
TCTGCCCAAGAATGAATTCCTAAGTCCCCTTATACCTGTGTCTCTGTTTAATAAATTAAT
ACCGCAAGTATTTAGCCCTGAAATAATACAGGTTAAATTGTGTAAACTTTGTAAAACTAG
GTAAGAAATTAGTATATATATTGAAATCTGGAAAGTATTTTCAGGTCAAATAAGTTGAGT
ATGGGAAAGATCTGTTCTCTGTTTTACAGTTTATTGAAGGATGTGAGTATATTTATCTAC
ATGCATAGATATTTAACAAATAGCAAAAATGTGTTTAACCTATGCATATATATGTTTGCT
GCTAAAGTTTCAAATGATAGCATATTTACATACCTCAACAGTCAAAGCTACTTGAGTTTG
AATTAGTGTCAACTGTTTTTTTATCTAAATTATTAATTTATTAAATCTGAGGTTAGCTAA
ATATGTATATTTGCTTTTTTCCCTCATAACCTTTAAGAATATATAGGGCTTTGTACTTTC
AAACCGTATTCATATTATTTCTTAATCTTTACCCAAAGAAATAATTTTTCTCTGTCAGCT
TTGCAACATTTACTTGTAAGCCTAGAGCCTCCATTAAGTTATTGAGTAGCAGGAACCTAA
AACACAATTCACAGAATGTTTTTGCAAATGTCTGATTTAAACTGTCTTAGTTGTAATTGA
GCTGGAGCAGTGGGGGAGGAAGGAACCCTAAACCTTCAGGTTATATTTTAAGTTTTCCAT
GTTTATATTCAGTGTCAGTAATGTCATGTTTTATCTTAATTGCCCAAATAGGACCCATGC
TATATAGGGTGTGTATAATGTTAGAATATTGTGCTTTCATCTTTGAAGCTACCTATGCCA
AGGACTTGACAATGAGTTCCCCCATATTTAGGCTATAGGACAAGCAGAGAATGTTTATCT
GTAATCAGAATACAATTGAATACTTCCTGGAATCTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGTGTTTTTTTTCAAAGGTAATGAAAATGGTATGATTTTGTCAAAGGACTTTGAACTATA
CTTATATCCGTTAAGTCCCAGAATGTACTTTAAAGTTAATGATCTGCCATACATTATCAT
TAGGGGGTGCTAAGGAGCAACTCATTTTAAGGTGATGAAATCACTGTTCAATTCTCATTT
TCTGCCCAAGAATGAATTCCTAAGTCCCCTTATACCTGTGTCTCTGTTTAATAAATTAAT
ACCGCAAGTATTTAGCCCTGAAATAATACAGGTTAAATTGTGTAAACTTTGTAAAACTAG
GTAAGAAATTAGTATATATATTGAAATCTGGAAAGTATTTTCAGGTCAAATAAGTTGAGT
ATGGGAAAGATCTGTTCTCTGTTTTACAGTTTATTGAAGGATGTGAGTATATTTATCTAC
ATGCATAGATATTTAACAAATAGCAAAAATGTGTTTAACCTATGCATATATATGTTTGCT
GCTAAAGTTTCAAATGATAGCATATTTACATACCTCAACAGTCAAAGCTACTTGAGTTTG
AATTAGTGTCAACTGTTTTTTTATCTAAATTATTAATTTATTAAATCTGAGGTTAGCTAA
ATATGTATATTTGCTTTTTTCCCTCATAACCTTTAAGAATATATAGGGCTTTGTACTTTC
AAACCGTATTCATATTATTTCTTAATCTTTACCCAAAGAAATAATTTTTCTCTGTCAGCT
TTGCAACATTTACTTGTAAGCCTAGAGCCTCCATTAAGTTATTGAGTAGCAGGAACCTAA
AACACAATTCACAGAATGTTTTTGCAAATGTCTGATTTAAACTGTCTTAGTTGTAATTGA
GCTGGAGCAGTGGGGGAGGAAGGAACCCTAAACCTTCAGGTTATATTTTAAGTTTTCCAT
GTTTATATTCAGTGTCAGTAATGTCATGTTTTATCTTAATTGCCCAAATAGGACCCATGC
TATATAGGGTGTGTATAATGTTAGAATATTGTGCTTTCATCTTTGAAGCTACCTATGCCA
AGGACTTGACAATGAGTTCCCCCATATTTAGGCTATAGGACAAGCAGAGAATGTTTATCT
GTAATCAGAATACAATTGAATACTTCCTGGAATCTG

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               1-641, gnl|bosTau2|chr14 (12596680-12596023)
               


               
               993-1113, gnl|bosTau2|chr14 (12595531-12595412)
               

               
               993-1113, gnl|Hg17|chr5 (115193108-115192996)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-641, gnl|bosTau2|chr14 (12596680-12596023)
               


               
               993-1113, gnl|bosTau2|chr14 (12595531-12595412)
               

               
               993-1113, gnl|Hg17|chr5 (115193108-115192996)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

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               fbs (0.175346)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fbs (0.175346)

	1-641, gnl\|bosTau2\|chr14 (12596680-12596023)

	993-1113, gnl\|bosTau2\|chr14 (12595531-12595412)
	993-1113, gnl\|Hg17\|chr5 (115193108-115192996)