Non-Coding RNA Search

Ss1.1-rfbs3930b_n9.5

Sequence:


               
               ATTCCTAGTCCCTGTTTGGGGGAGGTGGCTGGAAACAGGTTTTTGATGAATCTCTGGCTC
ATCTTCTGTCCAGGAGAGACAAGACCCACGAGAGCCTTCTTTTTTTGACACACACTAAGT
CATTGGCCAGAGGTCTTCGTGACAAATTTTTTTTTTTAACCCCAAATAGTTTTATTTGGA
TTATGTAAAAGCCTATCAAATTTATTTAAGTGTGAAACATGGGAACAATGGACTTCCACT
GAGCGATGTGAAAACGTTACAGGTTCAGTACTTCCAAAGGAAGAAACCTCCAAACCCAAA
AAGAATTTGTATTTTTGAAGAATGTGAAATAATGGTGTTTGCTTAATTGCTCATTTTGTA
AAAACTTAATATTGTACTTTAAAATATCTGCTAAGAAGTGAAAATTTAACTTTTTGGAAT
TGAAAAAGCAATATTAAATACTAATGAAATCCTAATTAAATGCTTATTTAAACCTGGTAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATTCCTAGTCCCTGTTTGGGGGAGGTGGCTGGAAACAGGTTTTTGATGAATCTCTGGCTC
ATCTTCTGTCCAGGAGAGACAAGACCCACGAGAGCCTTCTTTTTTTGACACACACTAAGT
CATTGGCCAGAGGTCTTCGTGACAAATTTTTTTTTTTAACCCCAAATAGTTTTATTTGGA
TTATGTAAAAGCCTATCAAATTTATTTAAGTGTGAAACATGGGAACAATGGACTTCCACT
GAGCGATGTGAAAACGTTACAGGTTCAGTACTTCCAAAGGAAGAAACCTCCAAACCCAAA
AAGAATTTGTATTTTTGAAGAATGTGAAATAATGGTGTTTGCTTAATTGCTCATTTTGTA
AAAACTTAATATTGTACTTTAAAATATCTGCTAAGAAGTGAAAATTTAACTTTTTGGAAT
TGAAAAAGCAATATTAAATACTAATGAAATCCTAATTAAATGCTTATTTAAACCTGGTAA

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               3-117, - strand, RNAz p=0.978547
               

               
               198-306, + strand, RNAz p=0.966333

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               3-117, - strand, RNAz p=0.978547
               

               
               198-306, + strand, RNAz p=0.966333

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               3-479, gnl|bosTau2|chr3 (75289352-75289834)
               

               
               3-479, gnl|Hg17|chr1 (37944802-37944332)
               

               
               3-479, gnl|Mm7|chr4 (124293565-124294033)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-479, gnl|bosTau2|chr3 (75289352-75289834)
               

               
               3-479, gnl|Hg17|chr1 (37944802-37944332)
               

               
               3-479, gnl|Mm7|chr4 (124293565-124294033)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               fbs (0.175346)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fbs (0.175346)

	3-117, - strand, RNAz p=0.978547
	198-306, + strand, RNAz p=0.966333

	3-479, gnl\|bosTau2\|chr3 (75289352-75289834)
	3-479, gnl\|Hg17\|chr1 (37944802-37944332)
	3-479, gnl\|Mm7\|chr4 (124293565-124294033)