Non-Coding RNA Search

Ss1.1-rfbs3932b_p9.5

Sequence:


               
               GTCCAGGCCAGTAAATGGACATCCTGAGGCCTGCCTCCCTCCACTCACATCAGTTTCCAG
ATCCAAATCTCTACAAGGGATTCTGTTTGGGGAAACTTAAATCAGATCCAGAACCTTGGC
TGCAAGGGAGTCTGGGACATGTACTTTTCTTCTTTCCAGCCTCAGCCATACAAAAAGGCA
CAACAGAGGAAAGTTAGGATGGATGTTGAACAAGCGCACCCACAGTTTTTGCCACTGGAA
CCCGCCTCTGGGCCTTGGCTTTGGAGCAGCAGTGCTTCCAGGTGTCCTGCTCAGTGGCTC
TGTTCCTGTCCAGGACAGGGGCCAGGGGTGGGGGGTGGGGGTGGGGGGCAGGCCTGCGGG
ACCAAGCTGAAGTGTCTCGTAGGCCTTGGCTTTTCTTTCTAATCCTGGGGCCTAGATTCT
GAACTTGGGGTCTCTGACCCCACCCATCTCAAAAGAGCCAGACTAGCTGAACTTGGGGGG
CTCCCTCCTCATAACTGTTCACCCCCTGGGGCCTTCCCTTGGGCAGGAGGAATCCTCAGT
CTCAGCTACCAGAATATCTGGGCCACCCCCAGCAGTATTTTTATTTTAAATGTTGCCCAT
TTTGTGAGTTATGAATTTGTATTAAATTAAAGTTACAGGCAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTCCAGGCCAGTAAATGGACATCCTGAGGCCTGCCTCCCTCCACTCACATCAGTTTCCAG
ATCCAAATCTCTACAAGGGATTCTGTTTGGGGAAACTTAAATCAGATCCAGAACCTTGGC
TGCAAGGGAGTCTGGGACATGTACTTTTCTTCTTTCCAGCCTCAGCCATACAAAAAGGCA
CAACAGAGGAAAGTTAGGATGGATGTTGAACAAGCGCACCCACAGTTTTTGCCACTGGAA
CCCGCCTCTGGGCCTTGGCTTTGGAGCAGCAGTGCTTCCAGGTGTCCTGCTCAGTGGCTC
TGTTCCTGTCCAGGACAGGGGCCAGGGGTGGGGGGTGGGGGTGGGGGGCAGGCCTGCGGG
ACCAAGCTGAAGTGTCTCGTAGGCCTTGGCTTTTCTTTCTAATCCTGGGGCCTAGATTCT
GAACTTGGGGTCTCTGACCCCACCCATCTCAAAAGAGCCAGACTAGCTGAACTTGGGGGG
CTCCCTCCTCATAACTGTTCACCCCCTGGGGCCTTCCCTTGGGCAGGAGGAATCCTCAGT
CTCAGCTACCAGAATATCTGGGCCACCCCCAGCAGTATTTTTATTTTAAATGTTGCCCAT
TTTGTGAGTTATGAATTTGTATTAAATTAAAGTTACAGGCAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               37-192, + strand, RNAz p=0.97488

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               37-192, + strand, RNAz p=0.97488

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of AX775829, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of AX775829, +

Aligned organism(s): 14 entry(ies)

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Aligned organism(s): 14 entry(ies)

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               1-319, gnl|bosTau2|chr2 (71671722-71671406)
               

               
               1-319, gnl|Hg17|chr1 (33280706-33280416)
               

               
               1-319, gnl|Mm7|chr4 (128355291-128355656)
               


               
               352-640, gnl|bosTau2|chr2 (71671391-71671093)
               

               
               352-640, gnl|canFam2|chr2 (71156044-71155580)
               

               
               352-640, gnl|echTel1|scaffold_314765 (4879-4466)
               

               
               352-640, gnl|hg17|chr1 (33279890-33280362)
               

               
               352-640, gnl|Hg17|chr1 (33280401-33280101)
               

               
               352-640, gnl|mm7|chr4 (128356159-128355720)
               

               
               352-640, gnl|Mm7|chr4 (128355671-128355973)
               

               
               352-640, gnl|oryCun1|scaffold_180267 (11777-12217)
               

               
               352-640, gnl|panTro1|chr1 (34018575-34019047)
               

               
               352-640, gnl|rheMac2|chr1 (35924306-35924771)
               

               
               352-640, gnl|rn3|chr5_random (1596138-1595699)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-319, gnl|bosTau2|chr2 (71671722-71671406)
               

               
               1-319, gnl|Hg17|chr1 (33280706-33280416)
               

               
               1-319, gnl|Mm7|chr4 (128355291-128355656)
               


               
               352-640, gnl|bosTau2|chr2 (71671391-71671093)
               

               
               352-640, gnl|canFam2|chr2 (71156044-71155580)
               

               
               352-640, gnl|echTel1|scaffold_314765 (4879-4466)
               

               
               352-640, gnl|hg17|chr1 (33279890-33280362)
               

               
               352-640, gnl|Hg17|chr1 (33280401-33280101)
               

               
               352-640, gnl|mm7|chr4 (128356159-128355720)
               

               
               352-640, gnl|Mm7|chr4 (128355671-128355973)
               

               
               352-640, gnl|oryCun1|scaffold_180267 (11777-12217)
               

               
               352-640, gnl|panTro1|chr1 (34018575-34019047)
               

               
               352-640, gnl|rheMac2|chr1 (35924306-35924771)
               

               
               352-640, gnl|rn3|chr5_random (1596138-1595699)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               ece (0.229305)
               

               
               fbs (0.175346)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ece (0.229305)
               

               
               fbs (0.175346)

	1-319, gnl\|bosTau2\|chr2 (71671722-71671406)
	1-319, gnl\|Hg17\|chr1 (33280706-33280416)
	1-319, gnl\|Mm7\|chr4 (128355291-128355656)

	352-640, gnl\|bosTau2\|chr2 (71671391-71671093)
	352-640, gnl\|canFam2\|chr2 (71156044-71155580)
	352-640, gnl\|echTel1\|scaffold_314765 (4879-4466)
	352-640, gnl\|hg17\|chr1 (33279890-33280362)
	352-640, gnl\|Hg17\|chr1 (33280401-33280101)
	352-640, gnl\|mm7\|chr4 (128356159-128355720)
	352-640, gnl\|Mm7\|chr4 (128355671-128355973)
	352-640, gnl\|oryCun1\|scaffold_180267 (11777-12217)
	352-640, gnl\|panTro1\|chr1 (34018575-34019047)
	352-640, gnl\|rheMac2\|chr1 (35924306-35924771)
	352-640, gnl\|rn3\|chr5_random (1596138-1595699)