Non-Coding RNA Search

Ss1.1-rfbs3933b_d12.5

Sequence:


               
               GTGTTTTTTCTCATTCTTCTTTCACTTCTGAGCTTGTTAAAGCAGGTTGGCATTAGCACT
CTTTGGAGGAAGCCAGAAATACGCAGATGACAAAAACAGAATTCCGATTCGAGGAGACCC
ACACATCCTTGTTGTTGGAGACCCAGGCTTGGGAAAGAGTCAGATGCTACAGCGTGCAGT
GTTGCTCCACGTGGCGTGTATGTTTGTGGTAATACCACAACCACCTCTGGTTTGACTGTA
ACTCTTTCAAAAGATAGTTCCTCTGGAGATTTCGCTTTGGAAGCTGGTGCCCTGGTACTT
GGCGATCAAGGTATCTGTGGAATAGATGAATTTGATAAGATGGGGAATCAACATCAAGCT
TTGTTAGAAGCCATGGAACAGCAAAGCATTAGTCTTGCTAAGGCTGGCATGGTTTGTAGC
CTCCCTGCAAGAACTTCCATTATTGCTGCTGCAAATCCAGTTGGAGGACACTACAATAAA
GCCAAAACAGTTTCTGAGAATTTAAAAATGGGGAGTGCTCTGCTATCCAGATTTGATTTG
GTCTTTATCCTGTTAGACACCCCAAATGAGGATCATGATCATTTACTCTCTGAACATGTG
ATTGCAATAAGGGCTGGAAAACAGAGAGCTGTTAGCAGTGCCACAGTAACTCGTATGAAT
AGTCAGGATTCAAATACTTCTATACTGGAAGTGGTTTCTGATAAACCACTATCAGAAAGA
CTAAAGGTGGTTCCTGGAGAAGAAATAGATCCAATTCCCCACCAACTATTGAGAAAATAC
ATTGGTTACGCTCGGCAGTATGTCTACCCAAGGCTATCCACAGAAGCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTGTTTTTTCTCATTCTTCTTTCACTTCTGAGCTTGTTAAAGCAGGTTGGCATTAGCACT
CTTTGGAGGAAGCCAGAAATACGCAGATGACAAAAACAGAATTCCGATTCGAGGAGACCC
ACACATCCTTGTTGTTGGAGACCCAGGCTTGGGAAAGAGTCAGATGCTACAGCGTGCAGT
GTTGCTCCACGTGGCGTGTATGTTTGTGGTAATACCACAACCACCTCTGGTTTGACTGTA
ACTCTTTCAAAAGATAGTTCCTCTGGAGATTTCGCTTTGGAAGCTGGTGCCCTGGTACTT
GGCGATCAAGGTATCTGTGGAATAGATGAATTTGATAAGATGGGGAATCAACATCAAGCT
TTGTTAGAAGCCATGGAACAGCAAAGCATTAGTCTTGCTAAGGCTGGCATGGTTTGTAGC
CTCCCTGCAAGAACTTCCATTATTGCTGCTGCAAATCCAGTTGGAGGACACTACAATAAA
GCCAAAACAGTTTCTGAGAATTTAAAAATGGGGAGTGCTCTGCTATCCAGATTTGATTTG
GTCTTTATCCTGTTAGACACCCCAAATGAGGATCATGATCATTTACTCTCTGAACATGTG
ATTGCAATAAGGGCTGGAAAACAGAGAGCTGTTAGCAGTGCCACAGTAACTCGTATGAAT
AGTCAGGATTCAAATACTTCTATACTGGAAGTGGTTTCTGATAAACCACTATCAGAAAGA
CTAAAGGTGGTTCCTGGAGAAGAAATAGATCCAATTCCCCACCAACTATTGAGAAAATAC
ATTGGTTACGCTCGGCAGTATGTCTACCCAAGGCTATCCACAGAAGCT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61842917|ref|XP_584128.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61842917|ref|XP_584128.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               611-728, - strand, RNAz p=0.963069
               

               
               635-728, + strand, RNAz p=0.702521

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               611-728, - strand, RNAz p=0.963069
               

               
               635-728, + strand, RNAz p=0.702521

Aligned organism(s): 20 entry(ies)

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Aligned organism(s): 20 entry(ies)

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               2-172, gnl|bosTau2|chr13 (32935463-32935292)
               

               
               2-172, gnl|Hg17|chr20 (5901672-5901842)
               

               
               2-172, gnl|Mm7|chr2 (132573595-132573756)
               


               
               502-728, gnl|bosTau2|chr13 (32925116-32924890)
               

               
               502-728, gnl|canFam2|chr24 (18861752-18861491)
               

               
               502-728, gnl|danRer3|chr3 (25247949-25247684)
               

               
               502-728, gnl|dasNov1|scaffold_19889 (38917-38656)
               

               
               502-728, gnl|echTel1|scaffold_284768 (4784-4523)
               

               
               502-728, gnl|fr1|chrUn (179304266-179304508)
               

               
               502-728, gnl|galGal2|chr3 (13272083-13272341)
               

               
               502-728, gnl|hg17|chr20 (5913396-5913661)
               

               
               502-728, gnl|Hg17|chr20 (5913421-5913648)
               

               
               502-728, gnl|mm7|chr2 (132579542-132579792)
               

               
               502-728, gnl|Mm7|chr2 (132579555-132579780)
               

               
               502-728, gnl|monDom2|scaffold_1 (36246461-36246739)
               

               
               502-728, gnl|panTro1|chr21_random (17256092-17255827)
               

               
               502-728, gnl|rheMac2|chr10 (39287605-39287870)
               

               
               502-728, gnl|rn3|chr3 (120543848-120544115)
               

               
               502-728, gnl|tetNig1|chr17 (9265545-9265313)
               

               
               502-728, gnl|xenTro1|scaffold_234 (5929-5675)

Aligned organism(s): 20 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-172, gnl|bosTau2|chr13 (32935463-32935292)
               

               
               2-172, gnl|Hg17|chr20 (5901672-5901842)
               

               
               2-172, gnl|Mm7|chr2 (132573595-132573756)
               


               
               502-728, gnl|bosTau2|chr13 (32925116-32924890)
               

               
               502-728, gnl|canFam2|chr24 (18861752-18861491)
               

               
               502-728, gnl|danRer3|chr3 (25247949-25247684)
               

               
               502-728, gnl|dasNov1|scaffold_19889 (38917-38656)
               

               
               502-728, gnl|echTel1|scaffold_284768 (4784-4523)
               

               
               502-728, gnl|fr1|chrUn (179304266-179304508)
               

               
               502-728, gnl|galGal2|chr3 (13272083-13272341)
               

               
               502-728, gnl|hg17|chr20 (5913396-5913661)
               

               
               502-728, gnl|Hg17|chr20 (5913421-5913648)
               

               
               502-728, gnl|mm7|chr2 (132579542-132579792)
               

               
               502-728, gnl|Mm7|chr2 (132579555-132579780)
               

               
               502-728, gnl|monDom2|scaffold_1 (36246461-36246739)
               

               
               502-728, gnl|panTro1|chr21_random (17256092-17255827)
               

               
               502-728, gnl|rheMac2|chr10 (39287605-39287870)
               

               
               502-728, gnl|rn3|chr3 (120543848-120544115)
               

               
               502-728, gnl|tetNig1|chr17 (9265545-9265313)
               

               
               502-728, gnl|xenTro1|scaffold_234 (5929-5675)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               tes (0.207814)
               

               
               fbs (0.175346)
               

               
               eje (0.0988338)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tes (0.207814)
               

               
               fbs (0.175346)
               

               
               eje (0.0988338)

	611-728, - strand, RNAz p=0.963069
	635-728, + strand, RNAz p=0.702521

	2-172, gnl\|bosTau2\|chr13 (32935463-32935292)
	2-172, gnl\|Hg17\|chr20 (5901672-5901842)
	2-172, gnl\|Mm7\|chr2 (132573595-132573756)

	502-728, gnl\|bosTau2\|chr13 (32925116-32924890)
	502-728, gnl\|canFam2\|chr24 (18861752-18861491)
	502-728, gnl\|danRer3\|chr3 (25247949-25247684)
	502-728, gnl\|dasNov1\|scaffold_19889 (38917-38656)
	502-728, gnl\|echTel1\|scaffold_284768 (4784-4523)
	502-728, gnl\|fr1\|chrUn (179304266-179304508)
	502-728, gnl\|galGal2\|chr3 (13272083-13272341)
	502-728, gnl\|hg17\|chr20 (5913396-5913661)
	502-728, gnl\|Hg17\|chr20 (5913421-5913648)
	502-728, gnl\|mm7\|chr2 (132579542-132579792)
	502-728, gnl\|Mm7\|chr2 (132579555-132579780)
	502-728, gnl\|monDom2\|scaffold_1 (36246461-36246739)
	502-728, gnl\|panTro1\|chr21_random (17256092-17255827)
	502-728, gnl\|rheMac2\|chr10 (39287605-39287870)
	502-728, gnl\|rn3\|chr3 (120543848-120544115)
	502-728, gnl\|tetNig1\|chr17 (9265545-9265313)
	502-728, gnl\|xenTro1\|scaffold_234 (5929-5675)