Non-Coding RNA Search

Ss1.1-rfbs3934b_o1.5

Sequence:


               
               CCCTCCTCAGATGCTGCATAAAAAGGACAGGCTTCTGGTCACTGCCTCCCTGCCTTTTCC
CGACTCAAACATCTAGAGGATTCATGAAAACACGGATTATCCTGCTTGGTGGCTCCGAGA
GGCTGAGGATGTCCACTTCCTCCTCATTCTCCGGCTCGCTCTTCTGAAACTGCTGCAGGT
CTTCCAGTTTCCGGCAGAGGTTGTCAGCAGAGGAGAATGATGATGGGCACTCTAAATGAG
AGGTGATCAGTCTTATGGCAGCTGTGGTGACAAAAGAGAGGGACTTCCCCTCCCCAAAAG
ACCAACAGCCTGAGAGCCAAAGAAGAAGGGTATCAAGGAAGCTGACCTTCTTTCCAGTTC
TGAAATTCTACGGATCTATAATTATGAGAACTAAGAAGTCATAAGGCAGACAAGCAGCAA
GACAGGCATCTTGTGTAAAGGTAGATGTGATGATGTTAAGGGCAACCTAAGTCAAAGCAG
CACACAATTCTGACTTACGCCACCAAAAATGAGGTCATCTTCCCACCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCCTCCTCAGATGCTGCATAAAAAGGACAGGCTTCTGGTCACTGCCTCCCTGCCTTTTCC
CGACTCAAACATCTAGAGGATTCATGAAAACACGGATTATCCTGCTTGGTGGCTCCGAGA
GGCTGAGGATGTCCACTTCCTCCTCATTCTCCGGCTCGCTCTTCTGAAACTGCTGCAGGT
CTTCCAGTTTCCGGCAGAGGTTGTCAGCAGAGGAGAATGATGATGGGCACTCTAAATGAG
AGGTGATCAGTCTTATGGCAGCTGTGGTGACAAAAGAGAGGGACTTCCCCTCCCCAAAAG
ACCAACAGCCTGAGAGCCAAAGAAGAAGGGTATCAAGGAAGCTGACCTTCTTTCCAGTTC
TGAAATTCTACGGATCTATAATTATGAGAACTAAGAAGTCATAAGGCAGACAAGCAGCAA
GACAGGCATCTTGTGTAAAGGTAGATGTGATGATGTTAAGGGCAACCTAAGTCAAAGCAG
CACACAATTCTGACTTACGCCACCAAAAATGAGGTCATCTTCCCACCC

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               111-527, gnl|bosTau2|chr1 (51936829-51936415)
               

               
               111-527, gnl|Hg17|chr3 (185007476-185007069)
               

               
               111-527, gnl|Mm7|chr16 (19777854-19777513)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               111-527, gnl|bosTau2|chr1 (51936829-51936415)
               

               
               111-527, gnl|Hg17|chr3 (185007476-185007069)
               

               
               111-527, gnl|Mm7|chr16 (19777854-19777513)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               fbs (0.175346)
               

               
               cty (0.10408)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fbs (0.175346)
               

               
               cty (0.10408)

	111-527, gnl\|bosTau2\|chr1 (51936829-51936415)
	111-527, gnl\|Hg17\|chr3 (185007476-185007069)
	111-527, gnl\|Mm7\|chr16 (19777854-19777513)