Non-Coding RNA Search

Ss1.1-rfbs3936b_o17.5

Sequence:


               
               GGGTCGGGTTAGATCCTGGCGTTGAGCTGGGTGCGGGGGGACCGAAGACTGGTGGGTCCG
GGCCCAGGCTAGGGGCGGAGCTGGGCGATGGCGTCCCGAGCGGCTCGCTGGCTGGCGTTG
GCACCTGTCCGGTTTGGGGCTTTCCGGAGCGGGCTGAGCCTGAGGAAAGGGGGTGATGTC
GCTGCCGGACAGGGCCACCCAGGTCGGAATCTGGTACCGTCGAGATGTCCTTCGGCCTCC
TCCGCGTGTTCTCCATCGTGATCCCCTTTCTCTACGTCGGGACGCTCATCAGCAAGAACT
TTGCTGCTCTCCTTGAAGAACATGACATCTTTGTTCCAGAGGATGATGATGACGATGACT
AACAGGGCATGGACACAGTGCAGAATGGACAAAGCCCTAACTTAAAAGCAGTGATGCTCA
CGGCCTCTCCTCCTTCCTGTCGTATCAGCAGATGGGCCCAGGGCAAGCCCTCAACCTCCT
GACCCCAGTGAAGCCTCCGACATGGTCGGTGACCACAGGCCAGATTGCCAGGCTCTGGGA
GGTTCCCAGAGATACGCTGTCCCCTGGGCATAATCAAATTATAAATAAATATAGTGAACA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGTCGGGTTAGATCCTGGCGTTGAGCTGGGTGCGGGGGGACCGAAGACTGGTGGGTCCG
GGCCCAGGCTAGGGGCGGAGCTGGGCGATGGCGTCCCGAGCGGCTCGCTGGCTGGCGTTG
GCACCTGTCCGGTTTGGGGCTTTCCGGAGCGGGCTGAGCCTGAGGAAAGGGGGTGATGTC
GCTGCCGGACAGGGCCACCCAGGTCGGAATCTGGTACCGTCGAGATGTCCTTCGGCCTCC
TCCGCGTGTTCTCCATCGTGATCCCCTTTCTCTACGTCGGGACGCTCATCAGCAAGAACT
TTGCTGCTCTCCTTGAAGAACATGACATCTTTGTTCCAGAGGATGATGATGACGATGACT
AACAGGGCATGGACACAGTGCAGAATGGACAAAGCCCTAACTTAAAAGCAGTGATGCTCA
CGGCCTCTCCTCCTTCCTGTCGTATCAGCAGATGGGCCCAGGGCAAGCCCTCAACCTCCT
GACCCCAGTGAAGCCTCCGACATGGTCGGTGACCACAGGCCAGATTGCCAGGCTCTGGGA
GGTTCCCAGAGATACGCTGTCCCCTGGGCATAATCAAATTATAAATAAATATAGTGAACA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q58EA5_MOUSE

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q58EA5_MOUSE

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               405-560, - strand, RNAz p=0.762288
               

               
               495-600, + strand, RNAz p=0.681282

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               405-560, - strand, RNAz p=0.762288
               

               
               495-600, + strand, RNAz p=0.681282

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_033318, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_033318, +

Aligned organism(s): 15 entry(ies)

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Aligned organism(s): 15 entry(ies)

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               54-224, gnl|bosTau2|chr5 (68513001-68513173)
               

               
               54-224, gnl|Hg17|chr22 (40800236-40800409)
               

               
               54-224, gnl|Mm7|chr15 (82430446-82430615)
               


               
               363-600, gnl|bosTau2|chr5 (68516445-68516679)
               

               
               363-600, gnl|canFam2|chr10 (26357815-26357537)
               

               
               363-600, gnl|dasNov1|scaffold_10243 (18918-19172)
               

               
               363-600, gnl|echTel1|scaffold_294971 (8626-8912)
               

               
               363-600, gnl|hg17|chr22 (40803599-40803877)
               

               
               363-600, gnl|Hg17|chr22 (40803620-40803854)
               

               
               363-600, gnl|loxAfr1|scaffold_16412 (7566-7274)
               

               
               363-600, gnl|mm7|chr15 (82433214-82433465)
               

               
               363-600, gnl|Mm7|chr15 (82433235-82433443)
               

               
               363-600, gnl|panTro1|chr23_random (12782204-12782483)
               

               
               363-600, gnl|rheMac2|chr10 (86051901-86052179)
               

               
               363-600, gnl|rn3|chr7 (120758915-120759167)

Aligned organism(s): 15 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               54-224, gnl|bosTau2|chr5 (68513001-68513173)
               

               
               54-224, gnl|Hg17|chr22 (40800236-40800409)
               

               
               54-224, gnl|Mm7|chr15 (82430446-82430615)
               


               
               363-600, gnl|bosTau2|chr5 (68516445-68516679)
               

               
               363-600, gnl|canFam2|chr10 (26357815-26357537)
               

               
               363-600, gnl|dasNov1|scaffold_10243 (18918-19172)
               

               
               363-600, gnl|echTel1|scaffold_294971 (8626-8912)
               

               
               363-600, gnl|hg17|chr22 (40803599-40803877)
               

               
               363-600, gnl|Hg17|chr22 (40803620-40803854)
               

               
               363-600, gnl|loxAfr1|scaffold_16412 (7566-7274)
               

               
               363-600, gnl|mm7|chr15 (82433214-82433465)
               

               
               363-600, gnl|Mm7|chr15 (82433235-82433443)
               

               
               363-600, gnl|panTro1|chr23_random (12782204-12782483)
               

               
               363-600, gnl|rheMac2|chr10 (86051901-86052179)
               

               
               363-600, gnl|rn3|chr7 (120758915-120759167)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               fbs (0.350693)
               

               
               nca (0.136874)
               

               
               eep (0.122564)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fbs (0.350693)
               

               
               nca (0.136874)
               

               
               eep (0.122564)

	405-560, - strand, RNAz p=0.762288
	495-600, + strand, RNAz p=0.681282

	54-224, gnl\|bosTau2\|chr5 (68513001-68513173)
	54-224, gnl\|Hg17\|chr22 (40800236-40800409)
	54-224, gnl\|Mm7\|chr15 (82430446-82430615)

	363-600, gnl\|bosTau2\|chr5 (68516445-68516679)
	363-600, gnl\|canFam2\|chr10 (26357815-26357537)
	363-600, gnl\|dasNov1\|scaffold_10243 (18918-19172)
	363-600, gnl\|echTel1\|scaffold_294971 (8626-8912)
	363-600, gnl\|hg17\|chr22 (40803599-40803877)
	363-600, gnl\|Hg17\|chr22 (40803620-40803854)
	363-600, gnl\|loxAfr1\|scaffold_16412 (7566-7274)
	363-600, gnl\|mm7\|chr15 (82433214-82433465)
	363-600, gnl\|Mm7\|chr15 (82433235-82433443)
	363-600, gnl\|panTro1\|chr23_random (12782204-12782483)
	363-600, gnl\|rheMac2\|chr10 (86051901-86052179)
	363-600, gnl\|rn3\|chr7 (120758915-120759167)