Non-Coding RNA Search

Ss1.1-rfbs3937b_a22.5

Sequence:


               
               TTTTCCTCATCTTCCTCTCTCAAGGACCACTTCCTCCCCATTTTGCCTGTCCATGGACTG
GGGCTTATGTCTTTGCTACTGTCTGGTTCTTAGTGTCCCAGACTCTGCGAGATGAGCTCC
AAGTTCTGTCCTCCCTGCCTCGTCCTGTAACGAGATATAGTATTTACTCTTAACATAGGA
TCATTTGAAACAGGAGTTCTGAGGAGGAGAGAGTGAGGGTTCTGCTATTGACTGACTTGA
GAGGTGGCTTCTCCTCCAAAGGTGTAGGCTCCAGAGTTTCCTAACATAGTAAATGTAAAG
CGCAGATAAGGGAAATAATAGTGTCTTTCTCTTTTCATTAAAGGTGTTTTAACCAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTCCTCATCTTCCTCTCTCAAGGACCACTTCCTCCCCATTTTGCCTGTCCATGGACTG
GGGCTTATGTCTTTGCTACTGTCTGGTTCTTAGTGTCCCAGACTCTGCGAGATGAGCTCC
AAGTTCTGTCCTCCCTGCCTCGTCCTGTAACGAGATATAGTATTTACTCTTAACATAGGA
TCATTTGAAACAGGAGTTCTGAGGAGGAGAGAGTGAGGGTTCTGCTATTGACTGACTTGA
GAGGTGGCTTCTCCTCCAAAGGTGTAGGCTCCAGAGTTTCCTAACATAGTAAATGTAAAG
CGCAGATAAGGGAAATAATAGTGTCTTTCTCTTTTCATTAAAGGTGTTTTAACCAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAA

Aligned organism(s): 14 entry(ies)

More info

Aligned organism(s): 14 entry(ies)

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               1-357, gnl|bosTau2|chr10 (16071918-16071562)
               

               
               1-357, gnl|canFam2|chr15 (21563644-21564101)
               

               
               1-357, gnl|dasNov1|scaffold_13530 (8300-8753)
               

               
               1-357, gnl|echTel1|scaffold_217244 (170-628)
               

               
               1-357, gnl|hg17|chr14 (21058915-21059360)
               

               
               1-357, gnl|Hg17|chr14 (21059409-21059071)
               

               
               1-357, gnl|loxAfr1|scaffold_122483 (4216-3754)
               

               
               1-357, gnl|mm7|chr14 (47644699-47645140)
               

               
               1-357, gnl|Mm7|chr14 (47645194-47644860)
               

               
               1-357, gnl|monDom2|scaffold_12 (28974773-28974313)
               

               
               1-357, gnl|oryCun1|scaffold_197115 (7964-8420)
               

               
               1-357, gnl|panTro1|chr15 (19976568-19977028)
               

               
               1-357, gnl|rheMac2|chr7 (84246781-84247242)
               

               
               1-357, gnl|rn3|chr15 (27777680-27778123)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-357, gnl|bosTau2|chr10 (16071918-16071562)
               

               
               1-357, gnl|canFam2|chr15 (21563644-21564101)
               

               
               1-357, gnl|dasNov1|scaffold_13530 (8300-8753)
               

               
               1-357, gnl|echTel1|scaffold_217244 (170-628)
               

               
               1-357, gnl|hg17|chr14 (21058915-21059360)
               

               
               1-357, gnl|Hg17|chr14 (21059409-21059071)
               

               
               1-357, gnl|loxAfr1|scaffold_122483 (4216-3754)
               

               
               1-357, gnl|mm7|chr14 (47644699-47645140)
               

               
               1-357, gnl|Mm7|chr14 (47645194-47644860)
               

               
               1-357, gnl|monDom2|scaffold_12 (28974773-28974313)
               

               
               1-357, gnl|oryCun1|scaffold_197115 (7964-8420)
               

               
               1-357, gnl|panTro1|chr15 (19976568-19977028)
               

               
               1-357, gnl|rheMac2|chr7 (84246781-84247242)
               

               
               1-357, gnl|rn3|chr15 (27777680-27778123)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               fbs (0.175346)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fbs (0.175346)

	1-357, gnl\|bosTau2\|chr10 (16071918-16071562)
	1-357, gnl\|canFam2\|chr15 (21563644-21564101)
	1-357, gnl\|dasNov1\|scaffold_13530 (8300-8753)
	1-357, gnl\|echTel1\|scaffold_217244 (170-628)
	1-357, gnl\|hg17\|chr14 (21058915-21059360)
	1-357, gnl\|Hg17\|chr14 (21059409-21059071)
	1-357, gnl\|loxAfr1\|scaffold_122483 (4216-3754)
	1-357, gnl\|mm7\|chr14 (47644699-47645140)
	1-357, gnl\|Mm7\|chr14 (47645194-47644860)
	1-357, gnl\|monDom2\|scaffold_12 (28974773-28974313)
	1-357, gnl\|oryCun1\|scaffold_197115 (7964-8420)
	1-357, gnl\|panTro1\|chr15 (19976568-19977028)
	1-357, gnl\|rheMac2\|chr7 (84246781-84247242)
	1-357, gnl\|rn3\|chr15 (27777680-27778123)