Ss1.1-rfbs3938b_k21.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCCCAGCCCGCGAGCATGGCCCCCTCAGCTGTGTCGGGCGGCAGCAGCCTGCCTAGCGGT TTCGCGGTCTTCATCACCTTCCCGGACCTGCTCTTCATCTTCGAGTTTATCTTTGGAGGC CTGGTGTGGATCCTGGTTGCTTCATCCCATGTACCCATCCCCCTAGTTCAGGGCTGGGTC ATGTTCGTGTCCGTGTTCTGCTTCATAGCCACCACTGCCCTACTCTTCCTGTATGTAATT GGTGCCCATGGCAGCAGGACTTTCTGGATCAACCTGGACGCAGCCTACCACTGTATCGCC TCCCTGTTTTACTTTGGTGCCTCAGTCCTGGAAGCTCTGGTCACCATCCGTATGCAAGAT GGCTATACCTACAAACAATACCATGAAAACATCTCTGCCGTGGTGTTTTCATATGTAGTC ACGCTGCTGTACGTGATCCACGCAGTGTTTTCTTTAATCAGATGGAAGTCTTCCTAAAGC AGAACTATAGATGAAAACCTGCAGAGTTTCAACTGATTGGCCCACCTTCCAGCTAACACT TTAGAACTGAGAAATGCTCTCGATGGTGGAAAAAGAAAACAAACCAAAAAAAAAAAGCAA TGCTCTGTTTCTTTGTGGGTATTAGGTTTACTCTCTCAATACCTTCGTGTCAGAGTAGGG AGCTTGCTACATTTATCCTCCAACTATTGAATTATTTTTCCAAGATCGTTACCTACTTGA AAGGGGGCAATGGGGACCATGATCTGAAAGACCAGGAAACAAAGATGCCCTGCTGACTCC AGGACTGGATCTTGAGAACTGTCTACTGGATTTTCCATGGGCTCGTTTGAGTGTCCTTCT TGCAGCAAGCTTCTCTGTCTCCAGGATATTCTACATATAGAAAATATTCTACAGAATATT TTCAAGAATATTCTGTCATGAAGAATAAAACTCACCCCACAAATATCTGCAGATGTCCAC AGTGGGAGATAATAAATGTTTGAAATACCTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAA GATGGTTCTGGATAAGTGTTCTGAGAACTGCTCTGCACCTCGGCCGCG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCCCAGCCCGCGAGCATGGCCCCCTCAGCTGTGTCGGGCGGCAGCAGCCTGCCTAGCGGT TTCGCGGTCTTCATCACCTTCCCGGACCTGCTCTTCATCTTCGAGTTTATCTTTGGAGGC CTGGTGTGGATCCTGGTTGCTTCATCCCATGTACCCATCCCCCTAGTTCAGGGCTGGGTC ATGTTCGTGTCCGTGTTCTGCTTCATAGCCACCACTGCCCTACTCTTCCTGTATGTAATT GGTGCCCATGGCAGCAGGACTTTCTGGATCAACCTGGACGCAGCCTACCACTGTATCGCC TCCCTGTTTTACTTTGGTGCCTCAGTCCTGGAAGCTCTGGTCACCATCCGTATGCAAGAT GGCTATACCTACAAACAATACCATGAAAACATCTCTGCCGTGGTGTTTTCATATGTAGTC ACGCTGCTGTACGTGATCCACGCAGTGTTTTCTTTAATCAGATGGAAGTCTTCCTAAAGC AGAACTATAGATGAAAACCTGCAGAGTTTCAACTGATTGGCCCACCTTCCAGCTAACACT TTAGAACTGAGAAATGCTCTCGATGGTGGAAAAAGAAAACAAACCAAAAAAAAAAAGCAA TGCTCTGTTTCTTTGTGGGTATTAGGTTTACTCTCTCAATACCTTCGTGTCAGAGTAGGG AGCTTGCTACATTTATCCTCCAACTATTGAATTATTTTTCCAAGATCGTTACCTACTTGA AAGGGGGCAATGGGGACCATGATCTGAAAGACCAGGAAACAAAGATGCCCTGCTGACTCC AGGACTGGATCTTGAGAACTGTCTACTGGATTTTCCATGGGCTCGTTTGAGTGTCCTTCT TGCAGCAAGCTTCTCTGTCTCCAGGATATTCTACATATAGAAAATATTCTACAGAATATT TTCAAGAATATTCTGTCATGAAGAATAAAACTCACCCCACAAATATCTGCAGATGTCCAC AGTGGGAGATAATAAATGTTTGAAATACCTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAA GATGGTTCTGGATAAGTGTTCTGAGAACTGCTCTGCACCTCGGCCGCG |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 32 entry(ies) | More info |
| Aligned organism(s): 32 entry(ies) | Help | Less info |
| 3-108, gnl|bosTau2|chr11 (2569647-2569752) | |
| 3-108, gnl|canFam2|chr17 (38109259-38109119) | |
| 3-108, gnl|echTel1|scaffold_303202 (2728-2888) | |
| 3-108, gnl|hg17|chr2 (95113306-95113467) | |
| 3-108, gnl|Hg17|chr2 (95113399-95113504) | |
| 3-108, gnl|loxAfr1|scaffold_84689 (137-304) | |
| 3-108, gnl|mm7|chr2 (127397094-127396933) | |
| 3-108, gnl|Mm7|chr2 (127396999-127396894) | |
| 3-108, gnl|oryCun1|scaffold_146451 (9436-9278) | |
| 3-108, gnl|panTro1|chr12 (98096188-98096349) | |
| 3-108, gnl|rheMac2|chr13 (96124748-96124909) | |
| 3-108, gnl|rn3|chr3 (115096028-115095875) | |
| 110-277, gnl|bosTau2|chr11 (2587848-2588015) | |
| 110-277, gnl|canFam2|chr17 (38092592-38092434) | |
| 110-277, gnl|danRer3|chrNA (172111547-172111409) | |
| 110-277, gnl|dasNov1|scaffold_139660 (2894-3048) | |
| 110-277, gnl|echTel1|scaffold_288263 (83563-83407) | |
| 110-277, gnl|fr1|chrUn (47167760-47167912) | |
| 110-277, gnl|hg17|chr2 (95135556-95135710) | |
| 110-277, gnl|Hg17|chr2 (95135579-95135746) | |
| 110-277, gnl|loxAfr1|scaffold_4159 (80761-80604) | |
| 110-277, gnl|mm7|chr2 (127381267-127381111) | |
| 110-277, gnl|Mm7|chr2 (127381240-127381073) | |
| 110-277, gnl|monDom2|scaffold_1 (66085306-66085458) | |
| 110-277, gnl|oryCun1|scaffold_210891 (134617-134463) | |
| 110-277, gnl|panTro1|chr12 (98118283-98118440) | |
| 110-277, gnl|rheMac2|chr13 (96144205-96144359) | |
| 110-277, gnl|rn3|chr3 (115079741-115079585) | |
| 110-277, gnl|tetNig1|chrUn_random (47732674-47732539) | |
| 402-891, gnl|bosTau2|chr11 (1907654-1907158) | |
| 402-891, gnl|Hg17|chr2 (95140999-95141510) | |
| 402-891, gnl|Mm7|chr2 (127375908-127375403) |
| Aligned organism(s): 32 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 3-108, gnl|bosTau2|chr11 (2569647-2569752) | |
| 3-108, gnl|canFam2|chr17 (38109259-38109119) | |
| 3-108, gnl|echTel1|scaffold_303202 (2728-2888) | |
| 3-108, gnl|hg17|chr2 (95113306-95113467) | |
| 3-108, gnl|Hg17|chr2 (95113399-95113504) | |
| 3-108, gnl|loxAfr1|scaffold_84689 (137-304) | |
| 3-108, gnl|mm7|chr2 (127397094-127396933) | |
| 3-108, gnl|Mm7|chr2 (127396999-127396894) | |
| 3-108, gnl|oryCun1|scaffold_146451 (9436-9278) | |
| 3-108, gnl|panTro1|chr12 (98096188-98096349) | |
| 3-108, gnl|rheMac2|chr13 (96124748-96124909) | |
| 3-108, gnl|rn3|chr3 (115096028-115095875) | |
| 110-277, gnl|bosTau2|chr11 (2587848-2588015) | |
| 110-277, gnl|canFam2|chr17 (38092592-38092434) | |
| 110-277, gnl|danRer3|chrNA (172111547-172111409) | |
| 110-277, gnl|dasNov1|scaffold_139660 (2894-3048) | |
| 110-277, gnl|echTel1|scaffold_288263 (83563-83407) | |
| 110-277, gnl|fr1|chrUn (47167760-47167912) | |
| 110-277, gnl|hg17|chr2 (95135556-95135710) | |
| 110-277, gnl|Hg17|chr2 (95135579-95135746) | |
| 110-277, gnl|loxAfr1|scaffold_4159 (80761-80604) | |
| 110-277, gnl|mm7|chr2 (127381267-127381111) | |
| 110-277, gnl|Mm7|chr2 (127381240-127381073) | |
| 110-277, gnl|monDom2|scaffold_1 (66085306-66085458) | |
| 110-277, gnl|oryCun1|scaffold_210891 (134617-134463) | |
| 110-277, gnl|panTro1|chr12 (98118283-98118440) | |
| 110-277, gnl|rheMac2|chr13 (96144205-96144359) | |
| 110-277, gnl|rn3|chr3 (115079741-115079585) | |
| 110-277, gnl|tetNig1|chrUn_random (47732674-47732539) | |
| 402-891, gnl|bosTau2|chr11 (1907654-1907158) | |
| 402-891, gnl|Hg17|chr2 (95140999-95141510) | |
| 402-891, gnl|Mm7|chr2 (127375908-127375403) |
| Expressed library(ies): 9 entry(ies) | More info |
| Expressed library(ies): 9 entry(ies) | Help | Less info |
| ton (0.877501) | |
| fbs (0.526039) | |
| spc (0.453463) | |
| ret (0.257467) | |
| nco (0.161734) | |
| bfe (0.149858) | |
| ssp (0.13552) | |
| ute (0.132784) | |
| bla (0.124347) |
| Expressed library(ies): 9 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ton (0.877501) | |
| fbs (0.526039) | |
| spc (0.453463) | |
| ret (0.257467) | |
| nco (0.161734) | |
| bfe (0.149858) | |
| ssp (0.13552) | |
| ute (0.132784) | |
| bla (0.124347) |