Non-Coding RNA Search

Ss1.1-rfbs3938b_o1.5

Sequence:


               
               GCCAGTCTACCTGGCGGCGGTGCTCGAGTATCTCACCCCGCTGTGGCTCCGCCGAGGACG
GCCGTTTGAAAGCCGCTCGGCCCCGGGGTCAGCTCGTGACTGCTGGCCTGGCCGCAGACG
CTGATGGGCTGCGGGGAGGACGCGGCGCCTAATGGAAGGCTGGGCCGGCCGTGCTGACGC
AGGGCCGGGGAGCGCGGCGGGAAGGTGAGTGGGTGCAGAGGCCGCCGGCGGGGCCGCGCG
CGTTACTCTCCAGCCCGTTGCTCCGGCCGCGACTTCAGACGGAACTCGATTTCGGGCGGC
GGCGGAGTCGGTCACTTCATTTGTTCCGGGGCCCCTTTGCTGCCGGGTCCCGGGCCTTGC
ACGTCCGCGCTCCCTCCATCTCCGCTCGCAGGCCCGTGCGCGTCCGGAACGAGACACTTG
GCGGTGTGAGCGTCTCCCGCGGTGGCCGGTCCGGGCGGGGTGGGGGCCGCGCCCCCAGGC
CCGCTCCCCTCCCGGCGGGCCCACTGGGCAAGCCAAGCACCTAGATACCAGCACTACTAG
TCCATTAACCCCCGTCTGGACTGAGCCGCCGTTGGCTTCGGAACTGGAATTTTGCAGCTA
ACCCATCCGAGACTAGTACTTTAGGTATTGGGGAGTTTCAGATGGACTAATTTTGTTTAT
TAAAGGATTGGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCCAGTCTACCTGGCGGCGGTGCTCGAGTATCTCACCCCGCTGTGGCTCCGCCGAGGACG
GCCGTTTGAAAGCCGCTCGGCCCCGGGGTCAGCTCGTGACTGCTGGCCTGGCCGCAGACG
CTGATGGGCTGCGGGGAGGACGCGGCGCCTAATGGAAGGCTGGGCCGGCCGTGCTGACGC
AGGGCCGGGGAGCGCGGCGGGAAGGTGAGTGGGTGCAGAGGCCGCCGGCGGGGCCGCGCG
CGTTACTCTCCAGCCCGTTGCTCCGGCCGCGACTTCAGACGGAACTCGATTTCGGGCGGC
GGCGGAGTCGGTCACTTCATTTGTTCCGGGGCCCCTTTGCTGCCGGGTCCCGGGCCTTGC
ACGTCCGCGCTCCCTCCATCTCCGCTCGCAGGCCCGTGCGCGTCCGGAACGAGACACTTG
GCGGTGTGAGCGTCTCCCGCGGTGGCCGGTCCGGGCGGGGTGGGGGCCGCGCCCCCAGGC
CCGCTCCCCTCCCGGCGGGCCCACTGGGCAAGCCAAGCACCTAGATACCAGCACTACTAG
TCCATTAACCCCCGTCTGGACTGAGCCGCCGTTGGCTTCGGAACTGGAATTTTGCAGCTA
ACCCATCCGAGACTAGTACTTTAGGTATTGGGGAGTTTCAGATGGACTAATTTTGTTTAT
TAAAGGATTGGT

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               37-657, gnl|bosTau2|chr15 (14284764-14284140)
               

               
               37-657, gnl|Hg17|chr11 (118470663-118469816)
               

               
               37-657, gnl|Mm7|chr9 (44269717-44270390)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               37-657, gnl|bosTau2|chr15 (14284764-14284140)
               

               
               37-657, gnl|Hg17|chr11 (118470663-118469816)
               

               
               37-657, gnl|Mm7|chr9 (44269717-44270390)

Expressed library(ies): 12 entry(ies)

More info

Expressed library(ies): 12 entry(ies)

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               cov (0.396458)
               

               
               fce (0.271592)
               

               
               ece (0.229305)
               

               
               fty (0.17584)
               

               
               fbs (0.175346)
               

               
               nje (0.16592)
               

               
               eli (0.151814)
               

               
               hyp (0.142837)
               

               
               eru (0.120048)
               

               
               ecc (0.115035)
               

               
               nbm (0.0993246)
               

               
               jej (0.0989218)

Expressed library(ies): 12 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cov (0.396458)
               

               
               fce (0.271592)
               

               
               ece (0.229305)
               

               
               fty (0.17584)
               

               
               fbs (0.175346)
               

               
               nje (0.16592)
               

               
               eli (0.151814)
               

               
               hyp (0.142837)
               

               
               eru (0.120048)
               

               
               ecc (0.115035)
               

               
               nbm (0.0993246)
               

               
               jej (0.0989218)

	37-657, gnl\|bosTau2\|chr15 (14284764-14284140)
	37-657, gnl\|Hg17\|chr11 (118470663-118469816)
	37-657, gnl\|Mm7\|chr9 (44269717-44270390)

	cov (0.396458)
	fce (0.271592)
	ece (0.229305)
	fty (0.17584)
	fbs (0.175346)
	nje (0.16592)
	eli (0.151814)
	hyp (0.142837)
	eru (0.120048)
	ecc (0.115035)
	nbm (0.0993246)
	jej (0.0989218)