Non-Coding RNA Search

Ss1.1-rfbs3939b_b7.5

Sequence:


               
               GTCGGCATTCCCACAGTGCCTGCAGCTGGCAAGGGGGAGCTCTCATTGCTGGAGGTCTGG
GTGCTTCTGAGGAACCGCTGAGCTCTATACTTTTTCTGAAACCAATCTCTTCTGGATTCC
TCTGGGAACCAATAGCCATTCAGCCTCCTGTTACCCCAAGGTACTCCCACACAGCTCATG
TGGTAAATGGAAAGCTTCTGTTGGTTGGAGGGGTCTGGATTCATTCCTCCTCAGTTCCTG
GAGTGACTGTTATTGATTTGTCTACCGGATTGAGCTCTGAGTATCAGATTGACACAATAG
ATGTGCCATGGCCATTAATGTTACACAACCATACCAGCATCCTCCTTCCTGAAGAACAAC
AGCTCCTGATCATTGGAGGTGGTGGAAACTGCTTTTCCTTTGGCACCTACTTCAACCCCC
ATGCAGTGACATTAGACCTTTCTTCCTTAAGTGCTAGACAATGAAGACTGGACTTTTGAT
ATATTCAGGACCCACCAAAGTAGATAATAAAGGTTTCCAAAGCAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTCGGCATTCCCACAGTGCCTGCAGCTGGCAAGGGGGAGCTCTCATTGCTGGAGGTCTGG
GTGCTTCTGAGGAACCGCTGAGCTCTATACTTTTTCTGAAACCAATCTCTTCTGGATTCC
TCTGGGAACCAATAGCCATTCAGCCTCCTGTTACCCCAAGGTACTCCCACACAGCTCATG
TGGTAAATGGAAAGCTTCTGTTGGTTGGAGGGGTCTGGATTCATTCCTCCTCAGTTCCTG
GAGTGACTGTTATTGATTTGTCTACCGGATTGAGCTCTGAGTATCAGATTGACACAATAG
ATGTGCCATGGCCATTAATGTTACACAACCATACCAGCATCCTCCTTCCTGAAGAACAAC
AGCTCCTGATCATTGGAGGTGGTGGAAACTGCTTTTCCTTTGGCACCTACTTCAACCCCC
ATGCAGTGACATTAGACCTTTCTTCCTTAAGTGCTAGACAATGAAGACTGGACTTTTGAT
ATATTCAGGACCCACCAAAGTAGATAATAAAGGTTTCCAAAGCAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               41-400, + strand, RNAz p=0.796926

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               41-400, + strand, RNAz p=0.796926

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               47-143, + strand, RNAmicro p=0.967694

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               47-143, + strand, RNAmicro p=0.967694

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_014793, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_014793, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-519, gnl|bosTau2|chr21 (37503395-37502877)
               

               
               1-519, gnl|Hg17|chr15 (41408382-41407869)
               

               
               1-519, gnl|Mm7|chr2 (120879852-120879356)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-519, gnl|bosTau2|chr21 (37503395-37502877)
               

               
               1-519, gnl|Hg17|chr15 (41408382-41407869)
               

               
               1-519, gnl|Mm7|chr2 (120879852-120879356)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               ebs (0.236602)
               

               
               tes (0.207814)
               

               
               fbs (0.175346)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ebs (0.236602)
               

               
               tes (0.207814)
               

               
               fbs (0.175346)

	1-519, gnl\|bosTau2\|chr21 (37503395-37502877)
	1-519, gnl\|Hg17\|chr15 (41408382-41407869)
	1-519, gnl\|Mm7\|chr2 (120879852-120879356)