Non-Coding RNA Search

Ss1.1-rfbs3940b_p13.5.5

Sequence:


               
               ACCTGGCTGCGTCCACCCCATCTGACTCCCTGCTATATGACGACGGCCTCTCGGAGGAGG
AGACGCCCCTGGTGGACTGTAATAATGCTCCCCTCCCTCGAACCCTTCCCTCCACGTGGA
TTGAAAACAAACTCTATGGTAGAATTTCACATGCATTTACTAGATTTTAGCCACGTTGTT
CCTCTCTGCACTGTCCTTTACTCTCTGTAACGCTTTTTAGGAGTGTTTCTGGTCTGAATG
AAACCAAGATCTGCTCAGAACCTTTTTGTTTGTAAATGTCTGAGTTTGCATCCGTTGACA
TTCAGGCATTTTGACCACTGTTGTTTTCTTTAAAAAGGATGTGAAAATATGTATAATTAC
CATGCTGCCCAGCCATTTAAGATGATAGAGAAAGAAGAAAGCAGGGCAGAACTCTCAGGG
GATATGGAGAAAATGATAAATAAGTCATTTGTCGGGTGGGTATCAAGGCATAGTCCTTCT
TGTATAACTACTGGGATAAATTTACCTGATCTGGGGGGCATTTAATTTAGAAAGGAGGAG
CCAGCACCTGTCGGCTGGCACCACGCGTGCAGCCAGTGGTTCCCCCAGGCCCTTTCTGAA
TGGCAGTGGCTCTTGGAGGCCACCTGGTGCCGGGGACCACCATCGGGGAGGACACAGGCA
GACTGCTTGTTTTCACATCCTTTGCATTACACCCTGTCGTGACAGTTGTCACTTATGAAG
TCAGTGCTAAAAGCTGGAGCAAAATGCTTTTTGAAAGAACGTAGTCTGTGGTGCTGTGGT
CTTGCAATGGACAGTAAATATGGTTCTTGCCAAAAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACCTGGCTGCGTCCACCCCATCTGACTCCCTGCTATATGACGACGGCCTCTCGGAGGAGG
AGACGCCCCTGGTGGACTGTAATAATGCTCCCCTCCCTCGAACCCTTCCCTCCACGTGGA
TTGAAAACAAACTCTATGGTAGAATTTCACATGCATTTACTAGATTTTAGCCACGTTGTT
CCTCTCTGCACTGTCCTTTACTCTCTGTAACGCTTTTTAGGAGTGTTTCTGGTCTGAATG
AAACCAAGATCTGCTCAGAACCTTTTTGTTTGTAAATGTCTGAGTTTGCATCCGTTGACA
TTCAGGCATTTTGACCACTGTTGTTTTCTTTAAAAAGGATGTGAAAATATGTATAATTAC
CATGCTGCCCAGCCATTTAAGATGATAGAGAAAGAAGAAAGCAGGGCAGAACTCTCAGGG
GATATGGAGAAAATGATAAATAAGTCATTTGTCGGGTGGGTATCAAGGCATAGTCCTTCT
TGTATAACTACTGGGATAAATTTACCTGATCTGGGGGGCATTTAATTTAGAAAGGAGGAG
CCAGCACCTGTCGGCTGGCACCACGCGTGCAGCCAGTGGTTCCCCCAGGCCCTTTCTGAA
TGGCAGTGGCTCTTGGAGGCCACCTGGTGCCGGGGACCACCATCGGGGAGGACACAGGCA
GACTGCTTGTTTTCACATCCTTTGCATTACACCCTGTCGTGACAGTTGTCACTTATGAAG
TCAGTGCTAAAAGCTGGAGCAAAATGCTTTTTGAAAGAACGTAGTCTGTGGTGCTGTGGT
CTTGCAATGGACAGTAAATATGGTTCTTGCCAAAAC

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               1-816, gnl|bosTau2|chr28 (8812356-8811533)
               

               
               1-816, gnl|Hg17|chr10 (42942039-42942923)
               

               
               1-816, gnl|Mm7|chr6 (118180886-118180062)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-816, gnl|bosTau2|chr28 (8812356-8811533)
               

               
               1-816, gnl|Hg17|chr10 (42942039-42942923)
               

               
               1-816, gnl|Mm7|chr6 (118180886-118180062)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               fbs (0.175346)
               

               
               ebs (0.118301)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fbs (0.175346)
               

               
               ebs (0.118301)

	1-816, gnl\|bosTau2\|chr28 (8812356-8811533)
	1-816, gnl\|Hg17\|chr10 (42942039-42942923)
	1-816, gnl\|Mm7\|chr6 (118180886-118180062)