Non-Coding RNA Search

Ss1.1-rfcc04b_b7.5

Sequence:


               
               CTAGCCCAGAATGCAAATAGCGATGGCTCTGAAGTGTTTGCTGTAAATAGTGGCCAAAAC
AAAACGAAATCTAAACATGTCTAGATAATAGGTTTATCACAAACAGACTTGAACATGTTT
CCTTTGTAAATGAGTCATCAGTAGCCTTGTTAAGTGCCAGTATAGCAGGGTTCCAGGGTT
CCATTTTCAAATCTTCATGATATTTGTATACTATACTTAATAGAAGAGTATATCTATTGA
ACAGTAGGGGCTGTTTATTGGTGAGTTCTCTAGCACCGAATTTCTGTTAGGAAACTTTGT
GAAAGAGAAGATGACCAAGAATAAAGGTTTCTCATGCTGATTTAGGAGTATACTTGCCAC
TGAGTAGCATCTTTAGAGAAGAAATTCATTACCTGGGTTTCACTTGGATAGTGCTGTCAG
TAGTGAATATATACCACAGGAGCCAGTACTATCTTTAATGCTGCTTGTTCTGTTGGGTGA
TGGAATCTTAAGAGCTGGTGGAAAGCAGTATTCCATGTTTAGAAAACAAAATAATAGATG
ATGTGAATGTATAGAAAGTGAAGGTAGGATGCTCAGGTTTTTTGCTTAGTTCTTAACCAA
TCTTGCCTGCAGTTTGGTATTGAAAAGCATGGCCAATTATGCTAAGTACATAGTAAAATA
CATTTAGAAATCCTTAATAACACTGGCTAGGTCAGTTGAATTCAGGTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTAGCCCAGAATGCAAATAGCGATGGCTCTGAAGTGTTTGCTGTAAATAGTGGCCAAAAC
AAAACGAAATCTAAACATGTCTAGATAATAGGTTTATCACAAACAGACTTGAACATGTTT
CCTTTGTAAATGAGTCATCAGTAGCCTTGTTAAGTGCCAGTATAGCAGGGTTCCAGGGTT
CCATTTTCAAATCTTCATGATATTTGTATACTATACTTAATAGAAGAGTATATCTATTGA
ACAGTAGGGGCTGTTTATTGGTGAGTTCTCTAGCACCGAATTTCTGTTAGGAAACTTTGT
GAAAGAGAAGATGACCAAGAATAAAGGTTTCTCATGCTGATTTAGGAGTATACTTGCCAC
TGAGTAGCATCTTTAGAGAAGAAATTCATTACCTGGGTTTCACTTGGATAGTGCTGTCAG
TAGTGAATATATACCACAGGAGCCAGTACTATCTTTAATGCTGCTTGTTCTGTTGGGTGA
TGGAATCTTAAGAGCTGGTGGAAAGCAGTATTCCATGTTTAGAAAACAAAATAATAGATG
ATGTGAATGTATAGAAAGTGAAGGTAGGATGCTCAGGTTTTTTGCTTAGTTCTTAACCAA
TCTTGCCTGCAGTTTGGTATTGAAAAGCATGGCCAATTATGCTAAGTACATAGTAAAATA
CATTTAGAAATCCTTAATAACACTGGCTAGGTCAGTTGAATTCAGGTT

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               5-107, gnl|bosTau2|chr20 (8765475-8765584)
               

               
               5-107, gnl|Hg17|chr5 (65001810-65001639)
               

               
               5-107, gnl|Mm7|chr13 (101277579-101277732)
               


               
               112-701, gnl|bosTau2|chr20 (8765621-8766225)
               

               
               112-701, gnl|Hg17|chr5 (65001626-65001023)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               5-107, gnl|bosTau2|chr20 (8765475-8765584)
               

               
               5-107, gnl|Hg17|chr5 (65001810-65001639)
               

               
               5-107, gnl|Mm7|chr13 (101277579-101277732)
               


               
               112-701, gnl|bosTau2|chr20 (8765621-8766225)
               

               
               112-701, gnl|Hg17|chr5 (65001626-65001023)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               fcc (0.197785)
               

               
               cty (0.10408)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fcc (0.197785)
               

               
               cty (0.10408)

	5-107, gnl\|bosTau2\|chr20 (8765475-8765584)
	5-107, gnl\|Hg17\|chr5 (65001810-65001639)
	5-107, gnl\|Mm7\|chr13 (101277579-101277732)

	112-701, gnl\|bosTau2\|chr20 (8765621-8766225)
	112-701, gnl\|Hg17\|chr5 (65001626-65001023)