Ss1.1-rfcc04b_m13.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCGCAACTCGCACCTGGTGAACCACCTGCGCGTGCACACGGGCGAGAAGCCCTTCCGCTG CGGCCAGTGCGAGAAGCGCTTCAGCGACTTCTCCACGCTCACGCAGCACCAGCGCACGCA CACGGGTGAGAAGCCCTACACCTGCATCGAGTGCGGCAAGAGCTTCATCCAGAGCTCGCA CCTGATCCGCCACCGCCGCATCCACACCGGCAACAAGCCGCACAAGTGCGCGGGCTGTGG CAAGGGCTTCCGCTACAAAACGCACCTCGCGCAGCACCAGAAGCTGCACCTGTGCTAGGG CTGCGCCCCTGGGGAGGCTGCCTCTTGGGAGTACGTGGGGACTAGATGTCCTGGGACAGA CCCTGTAGAAAAAGATGGGGAAGGGGAGGGAGGGACAATCTGAGAATGACTGGGGAGCTT TTAAGGGTTAGGGCCCGGAAGGGGAGGGCTGCGTAAGGGTTGTTCTTTTTGGAGTGCTGT ATTTTACCTGCTTCCCCCAGACGAAGAAAAGTTTGGAAGATGTGCCTG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCGCAACTCGCACCTGGTGAACCACCTGCGCGTGCACACGGGCGAGAAGCCCTTCCGCTG CGGCCAGTGCGAGAAGCGCTTCAGCGACTTCTCCACGCTCACGCAGCACCAGCGCACGCA CACGGGTGAGAAGCCCTACACCTGCATCGAGTGCGGCAAGAGCTTCATCCAGAGCTCGCA CCTGATCCGCCACCGCCGCATCCACACCGGCAACAAGCCGCACAAGTGCGCGGGCTGTGG CAAGGGCTTCCGCTACAAAACGCACCTCGCGCAGCACCAGAAGCTGCACCTGTGCTAGGG CTGCGCCCCTGGGGAGGCTGCCTCTTGGGAGTACGTGGGGACTAGATGTCCTGGGACAGA CCCTGTAGAAAAAGATGGGGAAGGGGAGGGAGGGACAATCTGAGAATGACTGGGGAGCTT TTAAGGGTTAGGGCCCGGAAGGGGAGGGCTGCGTAAGGGTTGTTCTTTTTGGAGTGCTGT ATTTTACCTGCTTCCCCCAGACGAAGAAAAGTTTGGAAGATGTGCCTG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 1-279, - strand, RNAz p=0.963412 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1-279, - strand, RNAz p=0.963412 |
| Aligned organism(s): 29 entry(ies) | More info |
| Aligned organism(s): 29 entry(ies) | Help | Less info |
| 1-528, gnl|bosTau2|chr3 (20195015-20195562) | |
| 1-528, gnl|Hg17|chr1 (119877667-119877140) | |
| 2-299, gnl|bosTau2|chr25 (25652566-25652863) | |
| 2-299, gnl|Hg17|chr15 (82965211-82965498) | |
| 4-298, gnl|bosTau2|chr14 (433856-434150) | |
| 4-298, gnl|Hg17|chr8 (144429800-144430094) | |
| 4-298, gnl|Mm7|chr16 (17365671-17365380) | |
| 5-281, gnl|bosTau2|chr11 (74554892-74554616) | |
| 5-281, gnl|canFam2|chr23 (12967835-12967522) | |
| 5-281, gnl|danRer3|chr16 (16133821-16134134) | |
| 5-281, gnl|dasNov1|scaffold_62801 (79-307) | |
| 5-281, gnl|echTel1|scaffold_323348 (2407-2093) | |
| 5-281, gnl|fr1|chrUn (318961032-318961345) | |
| 5-281, gnl|galGal2|chrUn (125531462-125531775) | |
| 5-281, gnl|hg17|chr11 (128670671-128670982) | |
| 5-281, gnl|Hg17|chr9 (127286314-127286590) | |
| 5-281, gnl|loxAfr1|scaffold_214806 (840-1154) | |
| 5-281, gnl|Mm7|chr11 (62796094-62795818) | |
| 5-281, gnl|mm7|chr15 (76030664-76030351) | |
| 5-281, gnl|monDom2|scaffold_5 (78314251-78313854) | |
| 5-281, gnl|oryCun1|scaffold_172392 (10471-10158) | |
| 5-281, gnl|panTro1|chr9 (130806421-130806732) | |
| 5-281, gnl|rheMac2|chr14 (127423842-127424152) | |
| 5-281, gnl|rn3|chr1 (84866668-84866355) | |
| 5-281, gnl|tetNig1|chrUn_random (115723032-115723345) | |
| 5-281, gnl|xenTro1|scaffold_1499 (110107-110506) | |
| 12-280, gnl|bosTau2|chr11 (50368554-50368286) | |
| 12-280, gnl|Hg17|chr19 (63766347-63766079) | |
| 12-280, gnl|Mm7|chr7 (11630945-11630677) |
| Aligned organism(s): 29 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-528, gnl|bosTau2|chr3 (20195015-20195562) | |
| 1-528, gnl|Hg17|chr1 (119877667-119877140) | |
| 2-299, gnl|bosTau2|chr25 (25652566-25652863) | |
| 2-299, gnl|Hg17|chr15 (82965211-82965498) | |
| 4-298, gnl|bosTau2|chr14 (433856-434150) | |
| 4-298, gnl|Hg17|chr8 (144429800-144430094) | |
| 4-298, gnl|Mm7|chr16 (17365671-17365380) | |
| 5-281, gnl|bosTau2|chr11 (74554892-74554616) | |
| 5-281, gnl|canFam2|chr23 (12967835-12967522) | |
| 5-281, gnl|danRer3|chr16 (16133821-16134134) | |
| 5-281, gnl|dasNov1|scaffold_62801 (79-307) | |
| 5-281, gnl|echTel1|scaffold_323348 (2407-2093) | |
| 5-281, gnl|fr1|chrUn (318961032-318961345) | |
| 5-281, gnl|galGal2|chrUn (125531462-125531775) | |
| 5-281, gnl|hg17|chr11 (128670671-128670982) | |
| 5-281, gnl|Hg17|chr9 (127286314-127286590) | |
| 5-281, gnl|loxAfr1|scaffold_214806 (840-1154) | |
| 5-281, gnl|Mm7|chr11 (62796094-62795818) | |
| 5-281, gnl|mm7|chr15 (76030664-76030351) | |
| 5-281, gnl|monDom2|scaffold_5 (78314251-78313854) | |
| 5-281, gnl|oryCun1|scaffold_172392 (10471-10158) | |
| 5-281, gnl|panTro1|chr9 (130806421-130806732) | |
| 5-281, gnl|rheMac2|chr14 (127423842-127424152) | |
| 5-281, gnl|rn3|chr1 (84866668-84866355) | |
| 5-281, gnl|tetNig1|chrUn_random (115723032-115723345) | |
| 5-281, gnl|xenTro1|scaffold_1499 (110107-110506) | |
| 12-280, gnl|bosTau2|chr11 (50368554-50368286) | |
| 12-280, gnl|Hg17|chr19 (63766347-63766079) | |
| 12-280, gnl|Mm7|chr7 (11630945-11630677) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| fcc (0.197785) | |
| cki (0.165235) |