Non-Coding RNA Search

Ss1.1-rfcc04b_p5.5

Sequence:


               
               TTCGCTCTTAATCTTAAGAAAGAGCAGCTGGAAATAATGATGCTCATATGCCAGGTAAAG
AATTTTGATCAAATAGGTAGTGACCAAGGGCCCCCTACCACATTTTTCTTATCCAGCTTG
TGTTCAGAAACACAATGCCCCATCCACTGAATCCCAGAGGGAGAAACGTTATATGCCATT
ACCATGACTTTCCCATTTTGTCTATTTTTACTCTTGTACATATGTTGTGGGTTTAAGAGT
CTTTGGCATTTGTTCCGTGACACCTTTTTTTGAATGGACTGTTTTAGAAGGGGGGGGGCG
CTGCTTTTCCGGTTGGGGATGGCAGCCCACAGGGCTTCCCAAAAGCCACCAGGACAGAGC
CACCTGACGCCAGAGCAGTTCCAGCATGATGCTGTCCAAGTCTGTATTTTCAGAGCCACT
CCAGGTTTGGGAGCAGGAAAGAAGCCCTTTTGTGTAGAAGTCTGAGTGGTCTGTGGGGGG
ACCTTTTGTAGAGTTTGCATGCCAGCGCGTGACTGAAGGCTGGGAAGCAGGGACCGCTCG
CTCCCCAGGCCTGCGCTGGAGGATGACGTGTGTCCGGTAGCACTAGGGGGAGAGACAATG
CATGGCAAAGTTTCGTCTTCTGTAGACTAGCATGCAGAGTTTCGTGTGTTAAAACAGTGT
ATGACATTGCTGTATCAAAGTTGTAAAATTAAGCATTATTTATTGAAAACTATGTATTTT
TTTGTAAAAACCTGATCACATAGAGCATATCCGTGGCTGTGCTTGTACTTCAGTGGGATC
AGCTCCTTGCCCCAGCCCCCTTGGTATGCAGTGTTATTGCTCAGGGTTGAAAATAGGACA
CCCCGATGTCTCTTTTGCAAGAGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTCGCTCTTAATCTTAAGAAAGAGCAGCTGGAAATAATGATGCTCATATGCCAGGTAAAG
AATTTTGATCAAATAGGTAGTGACCAAGGGCCCCCTACCACATTTTTCTTATCCAGCTTG
TGTTCAGAAACACAATGCCCCATCCACTGAATCCCAGAGGGAGAAACGTTATATGCCATT
ACCATGACTTTCCCATTTTGTCTATTTTTACTCTTGTACATATGTTGTGGGTTTAAGAGT
CTTTGGCATTTGTTCCGTGACACCTTTTTTTGAATGGACTGTTTTAGAAGGGGGGGGGCG
CTGCTTTTCCGGTTGGGGATGGCAGCCCACAGGGCTTCCCAAAAGCCACCAGGACAGAGC
CACCTGACGCCAGAGCAGTTCCAGCATGATGCTGTCCAAGTCTGTATTTTCAGAGCCACT
CCAGGTTTGGGAGCAGGAAAGAAGCCCTTTTGTGTAGAAGTCTGAGTGGTCTGTGGGGGG
ACCTTTTGTAGAGTTTGCATGCCAGCGCGTGACTGAAGGCTGGGAAGCAGGGACCGCTCG
CTCCCCAGGCCTGCGCTGGAGGATGACGTGTGTCCGGTAGCACTAGGGGGAGAGACAATG
CATGGCAAAGTTTCGTCTTCTGTAGACTAGCATGCAGAGTTTCGTGTGTTAAAACAGTGT
ATGACATTGCTGTATCAAAGTTGTAAAATTAAGCATTATTTATTGAAAACTATGTATTTT
TTTGTAAAAACCTGATCACATAGAGCATATCCGTGGCTGTGCTTGTACTTCAGTGGGATC
AGCTCCTTGCCCCAGCCCCCTTGGTATGCAGTGTTATTGCTCAGGGTTGAAAATAGGACA
CCCCGATGTCTCTTTTGCAAGAGC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               454-600, - strand, RNAz p=0.998477

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               454-600, - strand, RNAz p=0.998477

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               15-863, gnl|bosTau2|chr11 (71463027-71462164)
               

               
               15-863, gnl|Hg17|chr2 (5791151-5792054)
               

               
               15-863, gnl|Mm7|chr12 (25171894-25170965)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               15-863, gnl|bosTau2|chr11 (71463027-71462164)
               

               
               15-863, gnl|Hg17|chr2 (5791151-5792054)
               

               
               15-863, gnl|Mm7|chr12 (25171894-25170965)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               ecc (0.46014)
               

               
               fcc (0.197785)
               

               
               eye (0.170503)
               

               
               ebs (0.118301)
               

               
               nbm (0.0993246)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ecc (0.46014)
               

               
               fcc (0.197785)
               

               
               eye (0.170503)
               

               
               ebs (0.118301)
               

               
               nbm (0.0993246)

	15-863, gnl\|bosTau2\|chr11 (71463027-71462164)
	15-863, gnl\|Hg17\|chr2 (5791151-5792054)
	15-863, gnl\|Mm7\|chr12 (25171894-25170965)

	ecc (0.46014)
	fcc (0.197785)
	eye (0.170503)
	ebs (0.118301)
	nbm (0.0993246)