Non-Coding RNA Search

Ss1.1-rfcc07b_l22.5

Sequence:


               
               GGTGCCCTCAACTGGCAACAGTTGTATCTGTGGTTTTCAAGTACAGATAGCTGTCAAGCA
TGAAGTTCTTGTGTGCACACAGTAACACTTGGTTCACGCATGAAGGACAGTGCCTATGCA
CTTTGTGTAGCTATAATGTAGGTATCTGTGTAATTTCAGTGAAATGGTATATAGATGTAT
TGTAATTTAATTTAAATGCCATTTTTGGCTCTTAATCTAAGTGCAGTAGACTTGTTGATG
GATGTTTTGCAAACCCTTCTTAGATAGCTCGTCGTGAATCATTTCTCCTCTTTCTTACTG
TGACTTGGGAATGTATATCGGTGAAGAATTTATCTATGAATCCTTTGTATCGATGATTAT
TTGAATGTCTGTGTGTGTCCAGTATCTTTGTAAATATGCAATTCAGGGTAAGGGAGGGTT
GGCTGTGTGTCATGATTCTTATGGAAAGGTCACCTGACACCTCTGTAGAGCACAGTGAAT
GCAGCTGTGGAACTTTGGCTTATCTAGGCTTAGGTAGAGTTCGAATGAGAATATTTATCT
ACAGCCCTCCTTCACTTGGTGGAGTGGGCTCAGAGAGAGGAAGGGCTGGTCTGCTTCTGA
GCATGAGCTTGTCAGCCTCATGTCATTAGGTAAAGGTCTGTCTCTTTGGTTGCCAAATAC
TGGTCATGATGCTCATGACATAAAGGTTCTGAAGAGCCTTGTCCCCTTGAGTCAGGTACA
AGAAAGACATTCACTGACTAACTGCCAAGCAGGAGAAACCCCACAGAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGTGCCCTCAACTGGCAACAGTTGTATCTGTGGTTTTCAAGTACAGATAGCTGTCAAGCA
TGAAGTTCTTGTGTGCACACAGTAACACTTGGTTCACGCATGAAGGACAGTGCCTATGCA
CTTTGTGTAGCTATAATGTAGGTATCTGTGTAATTTCAGTGAAATGGTATATAGATGTAT
TGTAATTTAATTTAAATGCCATTTTTGGCTCTTAATCTAAGTGCAGTAGACTTGTTGATG
GATGTTTTGCAAACCCTTCTTAGATAGCTCGTCGTGAATCATTTCTCCTCTTTCTTACTG
TGACTTGGGAATGTATATCGGTGAAGAATTTATCTATGAATCCTTTGTATCGATGATTAT
TTGAATGTCTGTGTGTGTCCAGTATCTTTGTAAATATGCAATTCAGGGTAAGGGAGGGTT
GGCTGTGTGTCATGATTCTTATGGAAAGGTCACCTGACACCTCTGTAGAGCACAGTGAAT
GCAGCTGTGGAACTTTGGCTTATCTAGGCTTAGGTAGAGTTCGAATGAGAATATTTATCT
ACAGCCCTCCTTCACTTGGTGGAGTGGGCTCAGAGAGAGGAAGGGCTGGTCTGCTTCTGA
GCATGAGCTTGTCAGCCTCATGTCATTAGGTAAAGGTCTGTCTCTTTGGTTGCCAAATAC
TGGTCATGATGCTCATGACATAAAGGTTCTGAAGAGCCTTGTCCCCTTGAGTCAGGTACA
AGAAAGACATTCACTGACTAACTGCCAAGCAGGAGAAACCCCACAGAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               41-157, + strand, RNAz p=0.64171

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               41-157, + strand, RNAz p=0.64171

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_004171, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_004171, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               2-764, gnl|bosTau2|chr15 (39877132-39877917)
               

               
               2-764, gnl|Hg17|chr11 (35231073-35230285)
               

               
               2-764, gnl|Mm7|chr2 (102639887-102640660)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-764, gnl|bosTau2|chr15 (39877132-39877917)
               

               
               2-764, gnl|Hg17|chr11 (35231073-35230285)
               

               
               2-764, gnl|Mm7|chr2 (102639887-102640660)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               fcc (0.39557)
               

               
               fbs (0.175346)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fcc (0.39557)
               

               
               fbs (0.175346)

	2-764, gnl\|bosTau2\|chr15 (39877132-39877917)
	2-764, gnl\|Hg17\|chr11 (35231073-35230285)
	2-764, gnl\|Mm7\|chr2 (102639887-102640660)