Non-Coding RNA Search

Ss1.1-rfcc08b_c4.5

Sequence:


               
               GACAGCGGCACTCTCTGGACCAGTTTGCAGCTGCAGAACTGTGTGTGATGAGAAGCGCAG
CCCTGGCCCCGTCCCTGCCCTGACCCCATCCACACCGGGCTCCTGCCTGTCGGCCCCACC
TGGTCCATGCACACCTGCCACCCCTGACCTGTCAACCTTGCTCCAGGGCTCCCCACCCCT
GCCTGCTCCCACTGACCTGCATCTTGTCCGGTGTTGACCTTTCTGTTTCAGTGACCCCTT
GGCCCCGGGCTGGCGAGGAGTGGGGCTACTCTGTCCTGGGGCCTGATCACTCCCAGCCCG
CTGTGTAGGGTGGGGGCAGGGGCTCTTAAGCACAACCATGTACATAGTGAAGAAACACTA
ATAGATGTAGGGTGGCTGGTCCCTCTGTGCTGCCAGGGTCTCCTGGGGCTCCTGCCCTCA
CCCATGTGCAGACAGGGGTGGGGGAGACAGGGGCAGCAAAAGCTTCCTCCTGCTGGAGGA
GGGGCGCCGACTCAGCCCCATGTACAGATGCTCCAGCAGCCTCTTCCCCCAAGTTCCCCT
TTTCCGTGAAAGTGAAGAATTGGTCCGACTGTGTTTTTTAAAACCACCTCCTGTGTCCGC
CCTGGGGCCACACCAGGTGGAGGAGGAGGAGGCACCACACCTGTGCAGGGCCCAGCTGTG
TCCCACGTCTGCCCGTCTCGATTAAAGGACTCCCTCGTGGTGGGCCTGGCCAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GACAGCGGCACTCTCTGGACCAGTTTGCAGCTGCAGAACTGTGTGTGATGAGAAGCGCAG
CCCTGGCCCCGTCCCTGCCCTGACCCCATCCACACCGGGCTCCTGCCTGTCGGCCCCACC
TGGTCCATGCACACCTGCCACCCCTGACCTGTCAACCTTGCTCCAGGGCTCCCCACCCCT
GCCTGCTCCCACTGACCTGCATCTTGTCCGGTGTTGACCTTTCTGTTTCAGTGACCCCTT
GGCCCCGGGCTGGCGAGGAGTGGGGCTACTCTGTCCTGGGGCCTGATCACTCCCAGCCCG
CTGTGTAGGGTGGGGGCAGGGGCTCTTAAGCACAACCATGTACATAGTGAAGAAACACTA
ATAGATGTAGGGTGGCTGGTCCCTCTGTGCTGCCAGGGTCTCCTGGGGCTCCTGCCCTCA
CCCATGTGCAGACAGGGGTGGGGGAGACAGGGGCAGCAAAAGCTTCCTCCTGCTGGAGGA
GGGGCGCCGACTCAGCCCCATGTACAGATGCTCCAGCAGCCTCTTCCCCCAAGTTCCCCT
TTTCCGTGAAAGTGAAGAATTGGTCCGACTGTGTTTTTTAAAACCACCTCCTGTGTCCGC
CCTGGGGCCACACCAGGTGGAGGAGGAGGAGGCACCACACCTGTGCAGGGCCCAGCTGTG
TCCCACGTCTGCCCGTCTCGATTAAAGGACTCCCTCGTGGTGGGCCTGGCCAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               289-423, - strand, RNAz p=0.995857
               

               
               537-642, - strand, RNAz p=0.70317

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               289-423, - strand, RNAz p=0.995857
               

               
               537-642, - strand, RNAz p=0.70317

Aligned organism(s): 13 entry(ies)

More info

Aligned organism(s): 13 entry(ies)

Help | Less info


               
               73-713, gnl|bosTau2|chr4 (43057324-43057979)
               

               
               73-713, gnl|canFam2|chrUn (26045750-26045330)
               

               
               73-713, gnl|dasNov1|scaffold_163271 (1821-1265)
               

               
               73-713, gnl|echTel1|scaffold_259884 (8202-7754)
               

               
               73-713, gnl|hg17|chr7 (44580696-44581250)
               

               
               73-713, gnl|Hg17|chr7 (44580723-44581541)
               

               
               73-713, gnl|loxAfr1|scaffold_72164 (2739-3230)
               

               
               73-713, gnl|mm7|chr11 (6357324-6357820)
               

               
               73-713, gnl|Mm7|chr11 (6357350-6358085)
               

               
               73-713, gnl|monDom2|scaffold_1 (154974491-154973747)
               

               
               73-713, gnl|panTro1|chr6 (46098921-46099475)
               

               
               73-713, gnl|rheMac2|chr3 (81577403-81576851)
               

               
               73-713, gnl|rn3|chr14 (87172574-87173074)

Aligned organism(s): 13 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               73-713, gnl|bosTau2|chr4 (43057324-43057979)
               

               
               73-713, gnl|canFam2|chrUn (26045750-26045330)
               

               
               73-713, gnl|dasNov1|scaffold_163271 (1821-1265)
               

               
               73-713, gnl|echTel1|scaffold_259884 (8202-7754)
               

               
               73-713, gnl|hg17|chr7 (44580696-44581250)
               

               
               73-713, gnl|Hg17|chr7 (44580723-44581541)
               

               
               73-713, gnl|loxAfr1|scaffold_72164 (2739-3230)
               

               
               73-713, gnl|mm7|chr11 (6357324-6357820)
               

               
               73-713, gnl|Mm7|chr11 (6357350-6358085)
               

               
               73-713, gnl|monDom2|scaffold_1 (154974491-154973747)
               

               
               73-713, gnl|panTro1|chr6 (46098921-46099475)
               

               
               73-713, gnl|rheMac2|chr3 (81577403-81576851)
               

               
               73-713, gnl|rn3|chr14 (87172574-87173074)

Expressed library(ies): 5 entry(ies)

More info

Expressed library(ies): 5 entry(ies)

Help | Less info


               
               ece (0.229305)
               

               
               fcc (0.197785)
               

               
               cag (0.151194)
               

               
               pty (0.142714)
               

               
               cov (0.132153)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ece (0.229305)
               

               
               fcc (0.197785)
               

               
               cag (0.151194)
               

               
               pty (0.142714)
               

               
               cov (0.132153)

	289-423, - strand, RNAz p=0.995857
	537-642, - strand, RNAz p=0.70317

	73-713, gnl\|bosTau2\|chr4 (43057324-43057979)
	73-713, gnl\|canFam2\|chrUn (26045750-26045330)
	73-713, gnl\|dasNov1\|scaffold_163271 (1821-1265)
	73-713, gnl\|echTel1\|scaffold_259884 (8202-7754)
	73-713, gnl\|hg17\|chr7 (44580696-44581250)
	73-713, gnl\|Hg17\|chr7 (44580723-44581541)
	73-713, gnl\|loxAfr1\|scaffold_72164 (2739-3230)
	73-713, gnl\|mm7\|chr11 (6357324-6357820)
	73-713, gnl\|Mm7\|chr11 (6357350-6358085)
	73-713, gnl\|monDom2\|scaffold_1 (154974491-154973747)
	73-713, gnl\|panTro1\|chr6 (46098921-46099475)
	73-713, gnl\|rheMac2\|chr3 (81577403-81576851)
	73-713, gnl\|rn3\|chr14 (87172574-87173074)

	ece (0.229305)
	fcc (0.197785)
	cag (0.151194)
	pty (0.142714)
	cov (0.132153)