Non-Coding RNA Search

Ss1.1-rfcc08b_f3.5

Sequence:


               
               CCTCGTGCCGGAAAAGACTTATTCATACAATGAACCTAATGAAAGTTTTGATCCAAATTG
CAGTCTTGTTATACAGCAGGAAGTCTACCCTAAGGAAAAATCTTATAAATGTGATGAATG
TGGGAAAACTTTTAGTGTCAGTGCTCATCTTGTACAGCATCAGAGAATCCACACTGGTGA
AAAGCCCTACCTATGTACTGTATGTGGGAAAAGCTTCAGTCGGAGTTCATTTCTTATTGA
ACACCAGAGAATCCACACTGGTGAGAGACCCTATCTGTGCAGACAGTGTGGCAAAAGTTT
TAGTCAGCTTTGTAATCTTATTCGACATCAGGGTGTTCACACAGGTAATAAACCCCATAA
ATGTGATGAATGTGGGAAGGCCTTTAGCCGGAACTCAGGCCTTATTCAGCATCAGAGAAT
ACACACAGGAGAAAAACCTTATAAGTGTGAGAAGTGCGACAAAAGTTTTAGTCAACAGCG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCTCGTGCCGGAAAAGACTTATTCATACAATGAACCTAATGAAAGTTTTGATCCAAATTG
CAGTCTTGTTATACAGCAGGAAGTCTACCCTAAGGAAAAATCTTATAAATGTGATGAATG
TGGGAAAACTTTTAGTGTCAGTGCTCATCTTGTACAGCATCAGAGAATCCACACTGGTGA
AAAGCCCTACCTATGTACTGTATGTGGGAAAAGCTTCAGTCGGAGTTCATTTCTTATTGA
ACACCAGAGAATCCACACTGGTGAGAGACCCTATCTGTGCAGACAGTGTGGCAAAAGTTT
TAGTCAGCTTTGTAATCTTATTCGACATCAGGGTGTTCACACAGGTAATAAACCCCATAA
ATGTGATGAATGTGGGAAGGCCTTTAGCCGGAACTCAGGCCTTATTCAGCATCAGAGAAT
ACACACAGGAGAAAAACCTTATAAGTGTGAGAAGTGCGACAAAAGTTTTAGTCAACAGCG

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               48-459, gnl|bosTau2|chr10 (8996894-8996480)
               

               
               48-459, gnl|Hg17|chr19 (42818687-42818285)
               

               
               48-459, gnl|Mm7|chr2 (127310322-127309911)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               48-459, gnl|bosTau2|chr10 (8996894-8996480)
               

               
               48-459, gnl|Hg17|chr19 (42818687-42818285)
               

               
               48-459, gnl|Mm7|chr2 (127310322-127309911)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               fcc (0.197785)
               

               
               tbr (0.154178)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fcc (0.197785)
               

               
               tbr (0.154178)

	48-459, gnl\|bosTau2\|chr10 (8996894-8996480)
	48-459, gnl\|Hg17\|chr19 (42818687-42818285)
	48-459, gnl\|Mm7\|chr2 (127310322-127309911)