Non-Coding RNA Search

Ss1.1-rfcc10b_j12.5

Sequence:


               
               TTGAGGGCAAATGACTGGGATGGACTCGGTTTTTGCCTCAGCGAGGCACTGCTGCATCGC
CGGGTCTCTGCCAGCTAGTGATATTTATGGATTCTAGCAACGGGGAGGACAGGATGGAGG
AGATATTGGACTGATGGTGCTGGTCCCCTGACGTCTGTGAACGGGTGCTCCCGTAATCGG
AGTTGCTTCCTGGAGGAACAGAGATGGATTCTGTCTGGCAGCAGTTGCCCTTTTGAAGCA
GGAGCCTGTGGAGGCCTCCTGGGAGCAGGACTTCAAAACCAGCAAATATGTCGGGAAGGT
TGTGGTCCAAGGCCATTTTTGCTGGTTATAAGCGGGGTCTCCGGAACCAGAGGGAGCACA
CAGCTCTTCTTAAAATTGAAGGTGTTTATGCCCGAGATGAAACTGAATTTTATCTAGGCA
AGAGATGTGCTTATGTGTACAAAGCAAAGAATAACACAGTGACTCCTGGCGGAAAACCTA
ACAAAACCAGAGTAATCTGGGGAAAGGTAACTCGTGCTCATGGCAACAGTGGCATGGTTC
GTGCCAAATTCCGAAGCAACCTTCCTGCCAAGGCCATTGGACACAGAATCCGTGTGATGC
TGTACCCTTCAAGAATTTAAACTTACTGAAAATTAAATAAAAGTGCATTTGTTCTCTTGT
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTGAGGGCAAATGACTGGGATGGACTCGGTTTTTGCCTCAGCGAGGCACTGCTGCATCGC
CGGGTCTCTGCCAGCTAGTGATATTTATGGATTCTAGCAACGGGGAGGACAGGATGGAGG
AGATATTGGACTGATGGTGCTGGTCCCCTGACGTCTGTGAACGGGTGCTCCCGTAATCGG
AGTTGCTTCCTGGAGGAACAGAGATGGATTCTGTCTGGCAGCAGTTGCCCTTTTGAAGCA
GGAGCCTGTGGAGGCCTCCTGGGAGCAGGACTTCAAAACCAGCAAATATGTCGGGAAGGT
TGTGGTCCAAGGCCATTTTTGCTGGTTATAAGCGGGGTCTCCGGAACCAGAGGGAGCACA
CAGCTCTTCTTAAAATTGAAGGTGTTTATGCCCGAGATGAAACTGAATTTTATCTAGGCA
AGAGATGTGCTTATGTGTACAAAGCAAAGAATAACACAGTGACTCCTGGCGGAAAACCTA
ACAAAACCAGAGTAATCTGGGGAAAGGTAACTCGTGCTCATGGCAACAGTGGCATGGTTC
GTGCCAAATTCCGAAGCAACCTTCCTGCCAAGGCCATTGGACACAGAATCCGTGTGATGC
TGTACCCTTCAAGAATTTAAACTTACTGAAAATTAAATAAAAGTGCATTTGTTCTCTTGT
AAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|16877708|gb|AAH17093.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|16877708|gb|AAH17093.1|

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               241-358, - strand, RNAz p=0.607658
               

               
               330-598, - strand, RNAz p=0.940657

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               241-358, - strand, RNAz p=0.607658
               

               
               330-598, - strand, RNAz p=0.940657

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               1-193, gnl|bosTau2|chr1 (42756984-42757178)
               

               
               1-193, gnl|Hg17|chr3 (199165429-199165626)
               

               
               1-193, gnl|Mm7|chr16 (32731061-32731251)
               


               
               241-672, gnl|bosTau2|chr13 (43930941-43931373)
               

               
               241-672, gnl|Hg17|chr8 (122461935-122461503)
               

               
               241-672, gnl|Mm7|chr17 (27331206-27330781)
               


               
               330-669, gnl|bosTau2|chr10 (56980623-56980960)
               

               
               330-669, gnl|Hg17|chr9 (71434113-71434454)
               

               
               330-669, gnl|Mm7|chr17 (27331115-27330785)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-193, gnl|bosTau2|chr1 (42756984-42757178)
               

               
               1-193, gnl|Hg17|chr3 (199165429-199165626)
               

               
               1-193, gnl|Mm7|chr16 (32731061-32731251)
               


               
               241-672, gnl|bosTau2|chr13 (43930941-43931373)
               

               
               241-672, gnl|Hg17|chr8 (122461935-122461503)
               

               
               241-672, gnl|Mm7|chr17 (27331206-27330781)
               


               
               330-669, gnl|bosTau2|chr10 (56980623-56980960)
               

               
               330-669, gnl|Hg17|chr9 (71434113-71434454)
               

               
               330-669, gnl|Mm7|chr17 (27331115-27330785)

Expressed library(ies): 62 entry(ies)

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Expressed library(ies): 62 entry(ies)

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               eje (3.36035)
               

               
               fty (2.98927)
               

               
               nca (2.87435)
               

               
               lnt (2.70386)
               

               
               elu (2.6975)
               

               
               eep (2.57384)
               

               
               mcp (2.38908)
               

               
               nje (2.32288)
               

               
               jca (2.2792)
               

               
               nmm (2.25764)
               

               
               nlu (2.10849)
               

               
               amn (2.08855)
               

               
               nep (2.02317)
               

               
               duo (1.90081)
               

               
               fcc (1.78006)
               

               
               nco (1.77907)
               

               
               ese (1.64453)
               

               
               med (1.62753)
               

               
               fli (1.62305)
               

               
               col (1.56006)
               

               
               ill (1.40474)
               

               
               ece (1.37583)
               

               
               eye (1.36402)
               

               
               cag (1.36075)
               

               
               cly (1.32706)
               

               
               eru (1.32053)
               

               
               ebs (1.30131)
               

               
               pty (1.28443)
               

               
               ecc (1.26539)
               

               
               ute (1.19506)
               

               
               cga (1.11638)
               

               
               nbm (1.09257)
               

               
               mas (1.05152)
               

               
               hyp (0.999857)
               

               
               jej (0.989218)
               

               
               cov (0.660764)
               

               
               csp (0.644745)
               

               
               eli (0.607257)
               

               
               aor (0.585823)
               

               
               fce (0.543183)
               

               
               ton (0.526501)
               

               
               fbs (0.526039)
               

               
               cut (0.509771)
               

               
               nms (0.427716)
               

               
               hlv (0.417769)
               

               
               sag (0.36543)
               

               
               rec (0.346141)
               

               
               fhi (0.339155)
               

               
               pla (0.267344)
               

               
               pgl (0.236967)
               

               
               hea (0.204499)
               

               
               cmu (0.186393)
               

               
               cki (0.165235)
               

               
               tbr (0.154178)
               

               
               cli (0.152812)
               

               
               isp (0.150376)
               

               
               che (0.136314)
               

               
               ova (0.129132)
               

               
               clu (0.119646)
               

               
               cbl (0.114797)
               

               
               spc (0.113366)
               

               
               cty (0.10408)

Expressed library(ies): 62 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eje (3.36035)
               

               
               fty (2.98927)
               

               
               nca (2.87435)
               

               
               lnt (2.70386)
               

               
               elu (2.6975)
               

               
               eep (2.57384)
               

               
               mcp (2.38908)
               

               
               nje (2.32288)
               

               
               jca (2.2792)
               

               
               nmm (2.25764)
               

               
               nlu (2.10849)
               

               
               amn (2.08855)
               

               
               nep (2.02317)
               

               
               duo (1.90081)
               

               
               fcc (1.78006)
               

               
               nco (1.77907)
               

               
               ese (1.64453)
               

               
               med (1.62753)
               

               
               fli (1.62305)
               

               
               col (1.56006)
               

               
               ill (1.40474)
               

               
               ece (1.37583)
               

               
               eye (1.36402)
               

               
               cag (1.36075)
               

               
               cly (1.32706)
               

               
               eru (1.32053)
               

               
               ebs (1.30131)
               

               
               pty (1.28443)
               

               
               ecc (1.26539)
               

               
               ute (1.19506)
               

               
               cga (1.11638)
               

               
               nbm (1.09257)
               

               
               mas (1.05152)
               

               
               hyp (0.999857)
               

               
               jej (0.989218)
               

               
               cov (0.660764)
               

               
               csp (0.644745)
               

               
               eli (0.607257)
               

               
               aor (0.585823)
               

               
               fce (0.543183)
               

               
               ton (0.526501)
               

               
               fbs (0.526039)
               

               
               cut (0.509771)
               

               
               nms (0.427716)
               

               
               hlv (0.417769)
               

               
               sag (0.36543)
               

               
               rec (0.346141)
               

               
               fhi (0.339155)
               

               
               pla (0.267344)
               

               
               pgl (0.236967)
               

               
               hea (0.204499)
               

               
               cmu (0.186393)
               

               
               cki (0.165235)
               

               
               tbr (0.154178)
               

               
               cli (0.152812)
               

               
               isp (0.150376)
               

               
               che (0.136314)
               

               
               ova (0.129132)
               

               
               clu (0.119646)
               

               
               cbl (0.114797)
               

               
               spc (0.113366)
               

               
               cty (0.10408)

	241-358, - strand, RNAz p=0.607658
	330-598, - strand, RNAz p=0.940657

	1-193, gnl\|bosTau2\|chr1 (42756984-42757178)
	1-193, gnl\|Hg17\|chr3 (199165429-199165626)
	1-193, gnl\|Mm7\|chr16 (32731061-32731251)

	241-672, gnl\|bosTau2\|chr13 (43930941-43931373)
	241-672, gnl\|Hg17\|chr8 (122461935-122461503)
	241-672, gnl\|Mm7\|chr17 (27331206-27330781)

	330-669, gnl\|bosTau2\|chr10 (56980623-56980960)
	330-669, gnl\|Hg17\|chr9 (71434113-71434454)
	330-669, gnl\|Mm7\|chr17 (27331115-27330785)

	eje (3.36035)
	fty (2.98927)
	nca (2.87435)
	lnt (2.70386)
	elu (2.6975)
	eep (2.57384)
	mcp (2.38908)
	nje (2.32288)
	jca (2.2792)
	nmm (2.25764)
	nlu (2.10849)
	amn (2.08855)
	nep (2.02317)
	duo (1.90081)
	fcc (1.78006)
	nco (1.77907)
	ese (1.64453)
	med (1.62753)
	fli (1.62305)
	col (1.56006)
	ill (1.40474)
	ece (1.37583)
	eye (1.36402)
	cag (1.36075)
	cly (1.32706)
	eru (1.32053)
	ebs (1.30131)
	pty (1.28443)
	ecc (1.26539)
	ute (1.19506)
	cga (1.11638)
	nbm (1.09257)
	mas (1.05152)
	hyp (0.999857)
	jej (0.989218)
	cov (0.660764)
	csp (0.644745)
	eli (0.607257)
	aor (0.585823)
	fce (0.543183)
	ton (0.526501)
	fbs (0.526039)
	cut (0.509771)
	nms (0.427716)
	hlv (0.417769)
	sag (0.36543)
	rec (0.346141)
	fhi (0.339155)
	pla (0.267344)
	pgl (0.236967)
	hea (0.204499)
	cmu (0.186393)
	cki (0.165235)
	tbr (0.154178)
	cli (0.152812)
	isp (0.150376)
	che (0.136314)
	ova (0.129132)
	clu (0.119646)
	cbl (0.114797)
	spc (0.113366)
	cty (0.10408)