Non-Coding RNA Search

Ss1.1-rfcc11b_a8.5

Sequence:


               
               TTTCTTGACGTTTCTCCAACTGAT------------------------------------
------------------------CAACTTTACTGATTCCATTTATTCTAATGATTTTTT
GGTGGCATCTTTATATATAGAGAGGATATTCCATATATACTATAATATCACCTGGAAATG
TGACAGTTTTACTTCCTTCATTTCAATTTAGATTTTTTAAAAATTCTTTTTGTTGTCTGA
TTGCTGTGGCTAGAACTTTCAATTCTACATTGAATAAAAGTAGTGAGATTGGACATTCTT
GCCTTGTTCCTAATCTTAAAGGTAAGATTTTCAGGTTTTTAGCATTGACTATGATGTTAG
CTATGGATTTTTCATAAATGGCTTTATTATGGTGCATGTAAGTTTATGAATAATATATCC
TCTTCTTGGATCATTATTTAATGTACTTCTCATCTTTTAAGAAAAATGTCTGTTTTTTAT
TGTAGGCATTTGATTTGTGGTTACTGTGAGGTTCATATATATCAACCTATAAATATATCT
ATTTGTTTTAAATAGATGTTTAAATTAAAACACAATCTAAAACCTCCAATAAATTTTTTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTCTTGACGTTTCTCCAACTGAT------------------------------------
------------------------CAACTTTACTGATTCCATTTATTCTAATGATTTTTT
GGTGGCATCTTTATATATAGAGAGGATATTCCATATATACTATAATATCACCTGGAAATG
TGACAGTTTTACTTCCTTCATTTCAATTTAGATTTTTTAAAAATTCTTTTTGTTGTCTGA
TTGCTGTGGCTAGAACTTTCAATTCTACATTGAATAAAAGTAGTGAGATTGGACATTCTT
GCCTTGTTCCTAATCTTAAAGGTAAGATTTTCAGGTTTTTAGCATTGACTATGATGTTAG
CTATGGATTTTTCATAAATGGCTTTATTATGGTGCATGTAAGTTTATGAATAATATATCC
TCTTCTTGGATCATTATTTAATGTACTTCTCATCTTTTAAGAAAAATGTCTGTTTTTTAT
TGTAGGCATTTGATTTGTGGTTACTGTGAGGTTCATATATATCAACCTATAAATATATCT
ATTTGTTTTAAATAGATGTTTAAATTAAAACACAATCTAAAACCTCCAATAAATTTTTTA

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               83-331, gnl|bosTau2|chr10 (25340648-25340401)
               

               
               83-331, gnl|hg17|chr14 (45014370-45015968)
               

               
               83-331, gnl|Hg17|chr14 (45015405-45015654)
               

               
               83-331, gnl|panTro1|chr15 (44273537-44275135)
               

               
               83-331, gnl|rheMac2|chr7 (108652124-108653678)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               83-331, gnl|bosTau2|chr10 (25340648-25340401)
               

               
               83-331, gnl|hg17|chr14 (45014370-45015968)
               

               
               83-331, gnl|Hg17|chr14 (45015405-45015654)
               

               
               83-331, gnl|panTro1|chr15 (44273537-44275135)
               

               
               83-331, gnl|rheMac2|chr7 (108652124-108653678)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               fcc (0.39557)
               

               
               ebs (0.118301)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fcc (0.39557)
               

               
               ebs (0.118301)

	83-331, gnl\|bosTau2\|chr10 (25340648-25340401)
	83-331, gnl\|hg17\|chr14 (45014370-45015968)
	83-331, gnl\|Hg17\|chr14 (45015405-45015654)
	83-331, gnl\|panTro1\|chr15 (44273537-44275135)
	83-331, gnl\|rheMac2\|chr7 (108652124-108653678)