Non-Coding RNA Search

Ss1.1-rfcc11b_k21.5

Sequence:


               
               AAAAAAAAAGTTGTATTTGACATCCTGTCACTTCTAACTAACTAGTCTTCACAGCTTGTC
TAGGTGATGGGGGTAGAAAAGCCTGAGTGGGACCCTGTGTCTATAGTCAGAAACACAAAC
ACTTCATTATTGATGTTGATTCATTCCATTTTAATTTCCATTTTTGTCATGTTTTATTTT
TGAAATTTGTTGTTTTCTTTTTGAATTTATGGAATTGTTGATACTTTCTACTAACAGCCA
TATAAAATTTGGTGTATATTGTTAGCTATTTCACTTGGATGTTTCATTTTGAAGGAAGTA
AATGTAATGTTGCTCATAGAGCTTCATCTGAAGTAGCCAGTCCTGTGATGAAATACTGTA
TTGTCCCAATGGTCATGCCCAGTGGCCCAGGATCTTACTGATGAGGCAGCCAGACCTGTC
AGGGTTGCTCTGTTGAAATGTGTTGTTTCTTATATGCAATCTCTTTTTTTCTTTTTTTTC
TTTTTGGCCCAATATTGAAGATGTCAAACTTTGTTTTTAAATAATATTTTAAAAAACTTT
TATTTACACACCTAAGTTCGTATTTTTTATGACTTTAGACTTCAATGGTTTTGTATATTG
GGACATTTTAATGTGATCATTGTATTAAATAAATTACACTAATAAACATCTTACACTAAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAAAAAAAAGTTGTATTTGACATCCTGTCACTTCTAACTAACTAGTCTTCACAGCTTGTC
TAGGTGATGGGGGTAGAAAAGCCTGAGTGGGACCCTGTGTCTATAGTCAGAAACACAAAC
ACTTCATTATTGATGTTGATTCATTCCATTTTAATTTCCATTTTTGTCATGTTTTATTTT
TGAAATTTGTTGTTTTCTTTTTGAATTTATGGAATTGTTGATACTTTCTACTAACAGCCA
TATAAAATTTGGTGTATATTGTTAGCTATTTCACTTGGATGTTTCATTTTGAAGGAAGTA
AATGTAATGTTGCTCATAGAGCTTCATCTGAAGTAGCCAGTCCTGTGATGAAATACTGTA
TTGTCCCAATGGTCATGCCCAGTGGCCCAGGATCTTACTGATGAGGCAGCCAGACCTGTC
AGGGTTGCTCTGTTGAAATGTGTTGTTTCTTATATGCAATCTCTTTTTTTCTTTTTTTTC
TTTTTGGCCCAATATTGAAGATGTCAAACTTTGTTTTTAAATAATATTTTAAAAAACTTT
TATTTACACACCTAAGTTCGTATTTTTTATGACTTTAGACTTCAATGGTTTTGTATATTG
GGACATTTTAATGTGATCATTGTATTAAATAAATTACACTAATAAACATCTTACACTAAC

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               6-660, gnl|bosTau2|chr22 (40725831-40725160)
               

               
               6-660, gnl|Hg17|chr3 (47990244-47989579)
               

               
               6-660, gnl|Mm7|chr9 (109701998-109702607)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               6-660, gnl|bosTau2|chr22 (40725831-40725160)
               

               
               6-660, gnl|Hg17|chr3 (47990244-47989579)
               

               
               6-660, gnl|Mm7|chr9 (109701998-109702607)

Expressed library(ies): 7 entry(ies)

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Expressed library(ies): 7 entry(ies)

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               spc (0.793561)
               

               
               cbe (0.239234)
               

               
               ebs (0.236602)
               

               
               fcc (0.197785)
               

               
               fco (0.157208)
               

               
               ret (0.128733)
               

               
               sug (0.127291)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               spc (0.793561)
               

               
               cbe (0.239234)
               

               
               ebs (0.236602)
               

               
               fcc (0.197785)
               

               
               fco (0.157208)
               

               
               ret (0.128733)
               

               
               sug (0.127291)

	6-660, gnl\|bosTau2\|chr22 (40725831-40725160)
	6-660, gnl\|Hg17\|chr3 (47990244-47989579)
	6-660, gnl\|Mm7\|chr9 (109701998-109702607)

	spc (0.793561)
	cbe (0.239234)
	ebs (0.236602)
	fcc (0.197785)
	fco (0.157208)
	ret (0.128733)
	sug (0.127291)