Non-Coding RNA Search

Ss1.1-rfcc11b_l1.5

Sequence:


               
               AACCTCATCATTTCCAAGGACGACTTAATTACCGTGCCTTTTCCTTTCTTTTGACGTCCT
TAGGGTAAGTTTGACGTCCCTTAGGGTAAGTTTTCCACCATTCAACAAACATTTCAAATG
CGCTGTATATGGCTTGAGTGGGAAACTGCATTGCATGCTGGCAGAGGAGGGCTCCCTGGG
ACCCAGAGAGCCCGGGACTCCGCTGACCAGAGGAAACAGCAAACGGTGTTACTGCTGGGG
GCCACCTCCACTGTCCCTGCAGGGTAACTGGCAGAGCTGGTACTGTCCACCACCGCCGAG
CAGAGATGGAGACGGTGCTAAGTTTTTACAGGTGTTTCAGCCAGTGGTTCTCCCCTGGGG
TTTAGCAGCACCCGTGTCCCCAGGGAACCTACTACAAGTGCAGGCACTCAGGTCCTGCTC
GGTCCTCCTGGGTCCGAAGCGCCAGCGCTGGGGCACGCGTGCCGCTGTTTGACAAGCCTT
CCAGGTAGAGCTGGAGAACCACTGGCTTGAGCTACTCTGGTGTCTTCATTGATTTTCTAC
AGCAGATTCCTAGTTTGGTGAGGTTTTAAATTTAGTTTTATTTTTATATAAAACAATGGC
CAGACTTTCATTAAGCTTGAGAAGCAAAAGCTCCCTGTAAATGTGCGTGGCCCTGGCCGA
GAACTGTCAAGTGAAAAAAATTGGAAGTTTAAGCAGGTTTTCAGTGTGCGTATCTTTTTG
ATGGTATGAAGAATTTACTTAGGCCTGACTGTTTTTAAACACCATGATGAATGTATAATT
TATGTTAAAGTATTAACACTTCTGTTACAAGGGAAAAAACTTTATGATTGCTGTCACATT
AGTCCTTACTCTCCTGTTAGCTTGGAACCTTTAAATTTCTATATTTAATTCTCATGTTAA
ATTAGTCTCCATAATCCCATGAAATTAGGTATTTTCGAAATTTAAACTCTGAGTCAAAAG
TTAGATAATTCAGCTGTTCAGAATAACGCTCTGGATGGCCAGCATTCTGAGAATGTATTA
AAACCAAACCTCCGCCTACGGTTATTCCTCTTTTACACATTAAACAGGTTGAGAACCAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AACCTCATCATTTCCAAGGACGACTTAATTACCGTGCCTTTTCCTTTCTTTTGACGTCCT
TAGGGTAAGTTTGACGTCCCTTAGGGTAAGTTTTCCACCATTCAACAAACATTTCAAATG
CGCTGTATATGGCTTGAGTGGGAAACTGCATTGCATGCTGGCAGAGGAGGGCTCCCTGGG
ACCCAGAGAGCCCGGGACTCCGCTGACCAGAGGAAACAGCAAACGGTGTTACTGCTGGGG
GCCACCTCCACTGTCCCTGCAGGGTAACTGGCAGAGCTGGTACTGTCCACCACCGCCGAG
CAGAGATGGAGACGGTGCTAAGTTTTTACAGGTGTTTCAGCCAGTGGTTCTCCCCTGGGG
TTTAGCAGCACCCGTGTCCCCAGGGAACCTACTACAAGTGCAGGCACTCAGGTCCTGCTC
GGTCCTCCTGGGTCCGAAGCGCCAGCGCTGGGGCACGCGTGCCGCTGTTTGACAAGCCTT
CCAGGTAGAGCTGGAGAACCACTGGCTTGAGCTACTCTGGTGTCTTCATTGATTTTCTAC
AGCAGATTCCTAGTTTGGTGAGGTTTTAAATTTAGTTTTATTTTTATATAAAACAATGGC
CAGACTTTCATTAAGCTTGAGAAGCAAAAGCTCCCTGTAAATGTGCGTGGCCCTGGCCGA
GAACTGTCAAGTGAAAAAAATTGGAAGTTTAAGCAGGTTTTCAGTGTGCGTATCTTTTTG
ATGGTATGAAGAATTTACTTAGGCCTGACTGTTTTTAAACACCATGATGAATGTATAATT
TATGTTAAAGTATTAACACTTCTGTTACAAGGGAAAAAACTTTATGATTGCTGTCACATT
AGTCCTTACTCTCCTGTTAGCTTGGAACCTTTAAATTTCTATATTTAATTCTCATGTTAA
ATTAGTCTCCATAATCCCATGAAATTAGGTATTTTCGAAATTTAAACTCTGAGTCAAAAG
TTAGATAATTCAGCTGTTCAGAATAACGCTCTGGATGGCCAGCATTCTGAGAATGTATTA
AAACCAAACCTCCGCCTACGGTTATTCCTCTTTTACACATTAAACAGGTTGAGAACCAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               494-830, gnl|bosTau2|chr10 (56292404-56292741)
               

               
               494-830, gnl|Hg17|chr4 (7176822-7177164)
               

               
               494-830, gnl|Mm7|chr5 (35536885-35536577)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               494-830, gnl|bosTau2|chr10 (56292404-56292741)
               

               
               494-830, gnl|Hg17|chr4 (7176822-7177164)
               

               
               494-830, gnl|Mm7|chr5 (35536885-35536577)

Expressed library(ies): 15 entry(ies)

More info

Expressed library(ies): 15 entry(ies)

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               aor (0.585823)
               

               
               hlv (0.278513)
               

               
               ssp (0.271039)
               

               
               clu (0.239292)
               

               
               fcc (0.197785)
               

               
               sag (0.182715)
               

               
               gul (0.177588)
               

               
               rec (0.17307)
               

               
               duo (0.172801)
               

               
               mga (0.160205)
               

               
               cag (0.151194)
               

               
               cst (0.140036)
               

               
               ova (0.129132)
               

               
               cbl (0.114797)
               

               
               eje (0.0988338)

Expressed library(ies): 15 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               aor (0.585823)
               

               
               hlv (0.278513)
               

               
               ssp (0.271039)
               

               
               clu (0.239292)
               

               
               fcc (0.197785)
               

               
               sag (0.182715)
               

               
               gul (0.177588)
               

               
               rec (0.17307)
               

               
               duo (0.172801)
               

               
               mga (0.160205)
               

               
               cag (0.151194)
               

               
               cst (0.140036)
               

               
               ova (0.129132)
               

               
               cbl (0.114797)
               

               
               eje (0.0988338)

	494-830, gnl\|bosTau2\|chr10 (56292404-56292741)
	494-830, gnl\|Hg17\|chr4 (7176822-7177164)
	494-830, gnl\|Mm7\|chr5 (35536885-35536577)

	aor (0.585823)
	hlv (0.278513)
	ssp (0.271039)
	clu (0.239292)
	fcc (0.197785)
	sag (0.182715)
	gul (0.177588)
	rec (0.17307)
	duo (0.172801)
	mga (0.160205)
	cag (0.151194)
	cst (0.140036)
	ova (0.129132)
	cbl (0.114797)
	eje (0.0988338)