Ss1.1-rfcc12b_m14.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCCGCCGTGGAGGAGCTGGTCTCGCGAGTGCGGCAGGCGACCGACTTCGCGGAGCAGTTT CGCTCCTACTCGGAGAGCGAGAAGCAATGGAAGGCTCGCATGGAATTCATCCTGCGCCAC CTGCCCGACTACCGCGACCCGCCCGACGGCGGCGGCCGCCTGGACCAGCTGCTGTCCCTT TCCATGGTCTGGGCTAATCACCTCTTCCTGGGTTGCAGTTACAACAAAGACCTCTTAGAC AAGGTGATGGAAATGGCTGATGGGATTGAAGTGGAAGATGTGCCACAGTTTACTACCAGA AGTGAATTAATGAAAAAGCATCAAAGCTAAGGCAGAAGATTCATCACATTTTCATCATTC ATTACAGGCTTGGAAAGGAGGCTGGGATGGATGCGACACTGACTACAGCAGCTCTCTTAA GACTTTTTGGTGTTAACAACATGTAGGAAAAGAGGCAACTGGAATGAATGGGAACGTTGT TTTGACGGGCGTTTTAAAAGTCCTCATTCTTCTATAGCTATCATTGTAAAAGTATGCATG GATATTTGATGTATTTAAAAATCATGCCCTCTTTTATTTTCAGTTTTTGACTGTTGATCA AAACGTTTAAAATACCTGTTTTATTTTTTTTAACTGATGTAATAATGGCTGGCAATGAAT TTTACACTTTGGATTTTTCAACAGTAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCCGCCGTGGAGGAGCTGGTCTCGCGAGTGCGGCAGGCGACCGACTTCGCGGAGCAGTTT CGCTCCTACTCGGAGAGCGAGAAGCAATGGAAGGCTCGCATGGAATTCATCCTGCGCCAC CTGCCCGACTACCGCGACCCGCCCGACGGCGGCGGCCGCCTGGACCAGCTGCTGTCCCTT TCCATGGTCTGGGCTAATCACCTCTTCCTGGGTTGCAGTTACAACAAAGACCTCTTAGAC AAGGTGATGGAAATGGCTGATGGGATTGAAGTGGAAGATGTGCCACAGTTTACTACCAGA AGTGAATTAATGAAAAAGCATCAAAGCTAAGGCAGAAGATTCATCACATTTTCATCATTC ATTACAGGCTTGGAAAGGAGGCTGGGATGGATGCGACACTGACTACAGCAGCTCTCTTAA GACTTTTTGGTGTTAACAACATGTAGGAAAAGAGGCAACTGGAATGAATGGGAACGTTGT TTTGACGGGCGTTTTAAAAGTCCTCATTCTTCTATAGCTATCATTGTAAAAGTATGCATG GATATTTGATGTATTTAAAAATCATGCCCTCTTTTATTTTCAGTTTTTGACTGTTGATCA AAACGTTTAAAATACCTGTTTTATTTTTTTTAACTGATGTAATAATGGCTGGCAATGAAT TTTACACTTTGGATTTTTCAACAGTAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 62 entry(ies) | More info |
| Aligned organism(s): 62 entry(ies) | Help | Less info |
| 1-218, gnl|bosTau2|chr7 (31278900-31279117) | |
| 1-218, gnl|canFam2|chr11 (25563665-25563807) | |
| 1-218, gnl|canFam2|chr11 (25563656-25563816) | |
| 1-218, gnl|dasNov1|scaffold_51039 (1436-1644) | |
| 1-218, gnl|echTel1|scaffold_85522 (693-551) | |
| 1-218, gnl|echTel1|scaffold_85522 (688-541) | |
| 1-218, gnl|echTel1|scaffold_85522 (693-542) | |
| 1-218, gnl|fr1|chrUn (24034176-24034014) | |
| 1-218, gnl|hg17|chr1 (222987737-222987879) | |
| 1-218, gnl|hg17|chr2 (26961806-26961954) | |
| 1-218, gnl|hg17|chr5 (133775198-133775358) | |
| 1-218, gnl|Hg17|chr5 (133775423-133775206) | |
| 1-218, gnl|loxAfr1|scaffold_5304 (8892-8750) | |
| 1-218, gnl|loxAfr1|scaffold_5304 (8887-8740) | |
| 1-218, gnl|loxAfr1|scaffold_5304 (8901-8741) | |
| 1-218, gnl|mm7|chr11 (51924710-51924573) | |
| 1-218, gnl|mm7|chr11 (51924710-51924563) | |
| 1-218, gnl|mm7|chr11 (51924724-51924564) | |
| 1-218, gnl|Mm7|chr11 (51924497-51924714) | |
| 1-218, gnl|monDom2|scaffold_6 (97782763-97782904) | |
| 1-218, gnl|monDom2|scaffold_6 (97782768-97782914) | |
| 1-218, gnl|monDom2|scaffold_6 (97782754-97782913) | |
| 1-218, gnl|oryCun1|scaffold_202444 (51369-51506) | |
| 1-218, gnl|oryCun1|scaffold_202444 (51369-51516) | |
| 1-218, gnl|oryCun1|scaffold_202444 (51355-51515) | |
| 1-218, gnl|panTro1|chr1 (206806601-206806743) | |
| 1-218, gnl|panTro1|chr12 (27885045-27885193) | |
| 1-218, gnl|panTro1|chr4 (140129156-140129316) | |
| 1-218, gnl|rheMac2|chr1 (143875013-143874871) | |
| 1-218, gnl|rheMac2|chr13 (26767011-26767159) | |
| 1-218, gnl|rheMac2|chr6 (130836979-130837139) | |
| 1-218, gnl|rn3|chr10 (37498693-37498556) | |
| 1-218, gnl|rn3|chr10 (37498693-37498546) | |
| 1-218, gnl|rn3|chr10 (37498707-37498547) | |
| 1-218, gnl|tetNig1|chr7 (7985090-7984966) | |
| 1-218, gnl|tetNig1|chr7 (7985101-7984957) | |
| 1-218, gnl|tetNig1|chrUn_random (97975103-97974950) | |
| 317-685, gnl|bosTau2|chr7 (31284707-31285050) | |
| 317-685, gnl|canFam2|chr11 (25556794-25557014) | |
| 317-685, gnl|dasNov1|scaffold_9313 (28062-28319) | |
| 317-685, gnl|dasNov1|scaffold_9313 (28065-28353) | |
| 317-685, gnl|echTel1|scaffold_85522 (1059-828) | |
| 317-685, gnl|echTel1|scaffold_85522 (1058-794) | |
| 317-685, gnl|hg17|chr1 (222987346-222987602) | |
| 317-685, gnl|hg17|chr2 (26961415-26961700) | |
| 317-685, gnl|Hg17|chr5 (133766518-133765612) | |
| 317-685, gnl|loxAfr1|scaffold_5304 (16788-16477) | |
| 317-685, gnl|loxAfr1|scaffold_5304 (16787-16443) | |
| 317-685, gnl|Mm7|chr11 (51932655-51932994) | |
| 317-685, gnl|mm7|chr9 (80007016-80006815) | |
| 317-685, gnl|mm7|chr9 (80007010-80006791) | |
| 317-685, gnl|monDom2|scaffold_1 (59017935-59018210) | |
| 317-685, gnl|oryCun1|scaffold_93571 (3297-3048) | |
| 317-685, gnl|oryCun1|scaffold_93571 (3304-3015) | |
| 317-685, gnl|panTro1|chr1 (206806210-206806466) | |
| 317-685, gnl|panTro1|chr12 (27884648-27884939) | |
| 317-685, gnl|rheMac2|chr1 (143875402-143875146) | |
| 317-685, gnl|rheMac2|chr13 (26766620-26766905) | |
| 317-685, gnl|rn3|chr8 (85048366-85048605) | |
| 317-685, gnl|rn3|chr8 (85048366-85048605) | |
| 446-649, gnl|bosTau2|chr10 (37322399-37322214) | |
| 446-649, gnl|Hg17|chr13 (39289735-39289529) |
| Aligned organism(s): 62 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-218, gnl|bosTau2|chr7 (31278900-31279117) | |
| 1-218, gnl|canFam2|chr11 (25563665-25563807) | |
| 1-218, gnl|canFam2|chr11 (25563656-25563816) | |
| 1-218, gnl|dasNov1|scaffold_51039 (1436-1644) | |
| 1-218, gnl|echTel1|scaffold_85522 (693-551) | |
| 1-218, gnl|echTel1|scaffold_85522 (688-541) | |
| 1-218, gnl|echTel1|scaffold_85522 (693-542) | |
| 1-218, gnl|fr1|chrUn (24034176-24034014) | |
| 1-218, gnl|hg17|chr1 (222987737-222987879) | |
| 1-218, gnl|hg17|chr2 (26961806-26961954) | |
| 1-218, gnl|hg17|chr5 (133775198-133775358) | |
| 1-218, gnl|Hg17|chr5 (133775423-133775206) | |
| 1-218, gnl|loxAfr1|scaffold_5304 (8892-8750) | |
| 1-218, gnl|loxAfr1|scaffold_5304 (8887-8740) | |
| 1-218, gnl|loxAfr1|scaffold_5304 (8901-8741) | |
| 1-218, gnl|mm7|chr11 (51924710-51924573) | |
| 1-218, gnl|mm7|chr11 (51924710-51924563) | |
| 1-218, gnl|mm7|chr11 (51924724-51924564) | |
| 1-218, gnl|Mm7|chr11 (51924497-51924714) | |
| 1-218, gnl|monDom2|scaffold_6 (97782763-97782904) | |
| 1-218, gnl|monDom2|scaffold_6 (97782768-97782914) | |
| 1-218, gnl|monDom2|scaffold_6 (97782754-97782913) | |
| 1-218, gnl|oryCun1|scaffold_202444 (51369-51506) | |
| 1-218, gnl|oryCun1|scaffold_202444 (51369-51516) | |
| 1-218, gnl|oryCun1|scaffold_202444 (51355-51515) | |
| 1-218, gnl|panTro1|chr1 (206806601-206806743) | |
| 1-218, gnl|panTro1|chr12 (27885045-27885193) | |
| 1-218, gnl|panTro1|chr4 (140129156-140129316) | |
| 1-218, gnl|rheMac2|chr1 (143875013-143874871) | |
| 1-218, gnl|rheMac2|chr13 (26767011-26767159) | |
| 1-218, gnl|rheMac2|chr6 (130836979-130837139) | |
| 1-218, gnl|rn3|chr10 (37498693-37498556) | |
| 1-218, gnl|rn3|chr10 (37498693-37498546) | |
| 1-218, gnl|rn3|chr10 (37498707-37498547) | |
| 1-218, gnl|tetNig1|chr7 (7985090-7984966) | |
| 1-218, gnl|tetNig1|chr7 (7985101-7984957) | |
| 1-218, gnl|tetNig1|chrUn_random (97975103-97974950) | |
| 317-685, gnl|bosTau2|chr7 (31284707-31285050) | |
| 317-685, gnl|canFam2|chr11 (25556794-25557014) | |
| 317-685, gnl|dasNov1|scaffold_9313 (28062-28319) | |
| 317-685, gnl|dasNov1|scaffold_9313 (28065-28353) | |
| 317-685, gnl|echTel1|scaffold_85522 (1059-828) | |
| 317-685, gnl|echTel1|scaffold_85522 (1058-794) | |
| 317-685, gnl|hg17|chr1 (222987346-222987602) | |
| 317-685, gnl|hg17|chr2 (26961415-26961700) | |
| 317-685, gnl|Hg17|chr5 (133766518-133765612) | |
| 317-685, gnl|loxAfr1|scaffold_5304 (16788-16477) | |
| 317-685, gnl|loxAfr1|scaffold_5304 (16787-16443) | |
| 317-685, gnl|Mm7|chr11 (51932655-51932994) | |
| 317-685, gnl|mm7|chr9 (80007016-80006815) | |
| 317-685, gnl|mm7|chr9 (80007010-80006791) | |
| 317-685, gnl|monDom2|scaffold_1 (59017935-59018210) | |
| 317-685, gnl|oryCun1|scaffold_93571 (3297-3048) | |
| 317-685, gnl|oryCun1|scaffold_93571 (3304-3015) | |
| 317-685, gnl|panTro1|chr1 (206806210-206806466) | |
| 317-685, gnl|panTro1|chr12 (27884648-27884939) | |
| 317-685, gnl|rheMac2|chr1 (143875402-143875146) | |
| 317-685, gnl|rheMac2|chr13 (26766620-26766905) | |
| 317-685, gnl|rn3|chr8 (85048366-85048605) | |
| 317-685, gnl|rn3|chr8 (85048366-85048605) | |
| 446-649, gnl|bosTau2|chr10 (37322399-37322214) | |
| 446-649, gnl|Hg17|chr13 (39289735-39289529) |
| Expressed library(ies): 23 entry(ies) | More info |
| Expressed library(ies): 23 entry(ies) | Help | Less info |
| cbe (1.19617) | |
| spc (0.566829) | |
| sag (0.548145) | |
| pro (0.512033) | |
| ski (0.440205) | |
| csk (0.422238) | |
| amn (0.417711) | |
| rec (0.346141) | |
| vin (0.332557) | |
| sme (0.305437) | |
| mgp (0.230681) | |
| ece (0.229305) | |
| jej (0.197844) | |
| fcc (0.197785) | |
| nep (0.183925) | |
| gul (0.177588) | |
| pla (0.133672) | |
| kid (0.129735) | |
| thg (0.126791) | |
| pgl (0.118483) | |
| ecc (0.115035) | |
| nbm (0.0993246) | |
| eje (0.0988338) |
| Expressed library(ies): 23 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cbe (1.19617) | |
| spc (0.566829) | |
| sag (0.548145) | |
| pro (0.512033) | |
| ski (0.440205) | |
| csk (0.422238) | |
| amn (0.417711) | |
| rec (0.346141) | |
| vin (0.332557) | |
| sme (0.305437) | |
| mgp (0.230681) | |
| ece (0.229305) | |
| jej (0.197844) | |
| fcc (0.197785) | |
| nep (0.183925) | |
| gul (0.177588) | |
| pla (0.133672) | |
| kid (0.129735) | |
| thg (0.126791) | |
| pgl (0.118483) | |
| ecc (0.115035) | |
| nbm (0.0993246) | |
| eje (0.0988338) |